RetrogeneDB ID: | retro_eeur_582 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_348653:485..863(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000015099 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT1 | ||
Ensembl ID: | ENSEEUG00000008175 | ||
Aliases: | None | ||
Description: | histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912] |
Percent Identity: | 96.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIYEDEQCLAFHDISPQAPTHFLVIPKKYISQISVAEDDD |
MADEIAKAQ.ARPG.DTIF.KIIRKEIPAKIIYEDEQCLAFHDISPQAPTHFLVIPKKYISQISVAEDDD | |
Retrocopy | MADEIAKAQDARPGSDTIF*KIIRKEIPAKIIYEDEQCLAFHDISPQAPTHFLVIPKKYISQISVAEDDD |
Parental | ESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG |
ESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLH.LGGRQM.WPPG | |
Retrocopy | ESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHILGGRQMTWPPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 37 .71 RPM |
SRP017611_kidney | 2 .25 RPM | 120 .96 RPM |
SRP017611_liver | 1 .13 RPM | 89 .39 RPM |