RetrogeneDB ID: | retro_mmul_759 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099548049365:83911..84288(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2237 | ||
Ensembl ID: | ENSMMUG00000009985 | ||
Aliases: | None | ||
Description: | histidine triad nucleotide-binding protein 1 [Source:RefSeq peptide;Acc:NP_001245033] |
Percent Identity: | 85.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MADEIAKAQVARPGGDTIFGKI-IRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISAAEDD |
MA.EIAKA.V.RPGG.TIFGK....KEIPA.IIFEDDRCLAFHDI.PQAPTHFLVIPK.H.SQISAAEDD | |
Retrocopy | MAGEIAKAHVTRPGGNTIFGKM<VCKEIPANIIFEDDRCLAFHDIPPQAPTHFLVIPKNHRSQISAAEDD |
Parental | DESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG |
DESLLGHL.IVGKKCAADLGLNKGYRMVVN.GSD.GQSVY.VHLHVLGG.QMH.PPG | |
Retrocopy | DESLLGHLVIVGKKCAADLGLNKGYRMVVNKGSDDGQSVYQVHLHVLGGQQMHRPPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 74 .96 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 115 .90 RPM |
SRP007412_cerebellum | 0 .06 RPM | 73 .23 RPM |
SRP007412_heart | 0 .00 RPM | 85 .15 RPM |
SRP007412_kidney | 0 .00 RPM | 119 .72 RPM |
SRP007412_liver | 0 .04 RPM | 163 .32 RPM |
SRP007412_testis | 0 .04 RPM | 76 .07 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3913 |
Pan troglodytes | retro_ptro_2661 |
Gorilla gorilla | retro_ggor_89 |