RetrogeneDB ID: | retro_ecab_550 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 20:24174982..24175259(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT1 | ||
Ensembl ID: | ENSECAG00000023180 | ||
Aliases: | None | ||
Description: | histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912] |
Percent Identity: | 67.68 % |
Parental protein coverage: | 76.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | KESQPK-IIFEDDQCLA-FHDISPQAPTHFLVIPK-KHISQISVAEDDDESLLGHLMIVGKKCAADLGLK |
KE.QPK.IIFEDD.CL..FHDISPQ.PT.FLVI.K.K..SQISVA..DDE...GHLMIV.KKCAADLGL. | |
Retrocopy | KEIQPK<IIFEDD*CLI<FHDISPQIPTYFLVIRK>KRVSQISVA--DDEESRGHLMIVDKKCAADLGLR |
Parental | KGYR-MVVNEGSDGGQSVYHVHLHVLGGR |
KGY....VNEGSDG.QSV.........GR | |
Retrocopy | KGYE<RAVNEGSDGRQSVTFISMFLEAGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 32 .70 RPM |
SRP021940_cerebellum | 0 .00 RPM | 77 .48 RPM |
SRP021940_embryo | 0 .00 RPM | 43 .24 RPM |
SRP021940_placental_villous | 0 .00 RPM | 44 .50 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 36 .04 RPM |
SRP021940_testis | 0 .06 RPM | 47 .25 RPM |