Parental gene:

HINT1, ENSECAG00000023180

Aliases:None
Description:histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912]
Organism:Horse (Equus caballus)
Coordinates:14:44237145..44240963(+)


>ENSECAG00000023180
ATGAGATCGCCAAGGCTCAGGCCGCTCGGCCTGGTGGGGACACGATCTTCGGGAAGATCATTCGCAAAGGAATCCCAGCC
CAAAATCATTTTTGAGGATGACCAGTGCCTTGCTTTCCATGACATTTCCCCTCAAGCGCCAACACATTTTCTGGTGATAC
CCAAGAAACATATATCCCAGATTTCTGTAGCAGAAGATGATGATGAAAGTCTTCTTGGACATTTAATGATTGTTGGCAAG
AAATGTGCTGCTGATCTGGGCCTGAAGAAAGGTTACCGAATGGTGGTGAATGAAGGTTCAGATGGGGGACAGTCTGTCTA
TCATGTTCATCTCCATGTTCTTGGAGGTCGGCAGATGAATTGGCCTCCTGGTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 36 .04 RPM
SRP021940_embryo 43 .24 RPM
SRP021940_cerebellum 77 .48 RPM
SRP021940_testis 47 .25 RPM
SRP021940_placental_villous 44 .50 RPM
SRP021940_articular_cartilage 32 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000032152 possible_ortholog 1 retrogene
retro_cfam_473,
Callithrix jacchus ENSCJAG00000014398 ortholog_one2many 3 retrogenes
retro_cjac_134, retro_cjac_142, retro_cjac_87,
Erinaceus europaeus ENSEEUG00000008175 ortholog_one2one 1 retrogene
retro_eeur_582,
Echinops telfairi ENSETEG00000010127 ortholog_one2many 1 retrogene
retro_etel_1,
Homo sapiens ENSG00000169567 ortholog_one2one 1 retrogene
retro_hsap_3913,
Gorilla gorilla ENSGGOG00000011967 ortholog_one2many 1 retrogene
retro_ggor_89,
Macropus eugenii ENSMEUG00000005368 ortholog_one2one 2 retrogenes
retro_meug_1001, retro_meug_848,
Myotis lucifugus ENSMLUG00000001091 possible_ortholog 2 retrogenes
retro_mluc_1388, retro_mluc_2100,
Macaca mulatta ENSMMUG00000009985 ortholog_one2one 2 retrogenes
retro_mmul_1896, retro_mmul_759,
Monodelphis domestica ENSMODG00000028727 ortholog_one2many 3 retrogenes
retro_mdom_102, retro_mdom_1741, retro_mdom_286,
Mustela putorius furo ENSMPUG00000011639 possible_ortholog 4 retrogenes
retro_mputfur_1337, retro_mputfur_1376, retro_mputfur_45, retro_mputfur_93,
Mus musculus ENSMUSG00000020267 ortholog_one2one 1 retrogene
retro_mmus_718,
Nomascus leucogenys ENSNLEG00000012431 ortholog_one2one 1 retrogene
retro_nleu_2155,
Oryctolagus cuniculus ENSOCUG00000006607 ortholog_one2many 5 retrogenes
retro_ocun_1374, retro_ocun_214, retro_ocun_643, retro_ocun_821, retro_ocun_968,
Otolemur garnettii ENSOGAG00000008850 ortholog_one2one 2 retrogenes
retro_ogar_1028, retro_ogar_1599,
Procavia capensis ENSPCAG00000004737 ortholog_one2one 1 retrogene
retro_pcap_407,
Pongo abelii ENSPPYG00000015747 ortholog_one2one 2 retrogenes
retro_pabe_3189, retro_pabe_909,
Pan troglodytes ENSPTRG00000017206 ortholog_one2one 1 retrogene
retro_ptro_2661,
Rattus norvegicus ENSRNOG00000000622 ortholog_one2many 1 retrogene
retro_rnor_98,
Sarcophilus harrisii ENSSHAG00000005834 ortholog_one2many 2 retrogenes
retro_shar_113, retro_shar_301,
Ictidomys tridecemlineatus ENSSTOG00000027920 ortholog_one2many 4 retrogenes
retro_itri_1129, retro_itri_114, retro_itri_177, retro_itri_260,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_264 92.80 100.00
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2. retro_ecab_356 64.10 93.55
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3. retro_ecab_550 67.68 76.61
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Download FASTA sequences of all ENSECAG00000023180 retrocopies