RetrogeneDB ID: | retro_ecab_356 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 16:12288741..12289088(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT1 | ||
Ensembl ID: | ENSECAG00000023180 | ||
Aliases: | None | ||
Description: | histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912] |
Percent Identity: | 64.1 % |
Parental protein coverage: | 93.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RLRPLGLVGTRSSGRSFAKESQPKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISVAE-DDDESLLG |
RLRP.....TRSSGR..A..S.PK.IFEDD..LAFHDI..QAPTHF.V..KK..S.ISVAE..DD.SLLG | |
Retrocopy | RLRPPNQITTRSSGRIPARKSRPKVIFEDD*HLAFHDIFLQAPTHFVVTSKKQVSRISVAE<GDDKSLLG |
Parental | HLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMN |
HLMIVG.KCAA.LGLKKG..M.V.EGS..GQ...H.H..V....QMN | |
Retrocopy | HLMIVGRKCAAALGLKKGCGMAVKEGSSKGQAGCHFHPRVPRSQQMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 32 .70 RPM |
SRP021940_cerebellum | 0 .00 RPM | 77 .48 RPM |
SRP021940_embryo | 0 .00 RPM | 43 .24 RPM |
SRP021940_placental_villous | 0 .00 RPM | 44 .50 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 36 .04 RPM |
SRP021940_testis | 0 .00 RPM | 47 .25 RPM |
Species | RetrogeneDB ID |
---|---|
Sus scrofa | retro_sscr_371 |