RetrogeneDB ID: | retro_pcap_407 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_72189:278..653(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT1 | ||
Ensembl ID: | ENSPCAG00000004737 | ||
Aliases: | None | ||
Description: | histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912] |
Percent Identity: | 81.6 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADEIAKAQAARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDD |
MADEIAKAQA.RPGG.TIF.KII.KEIPAKIIFEDDRCLA.HDISPQAP..FLVIPKKHISQI.VAEDDD | |
Retrocopy | MADEIAKAQALRPGGNTIFRKIILKEIPAKIIFEDDRCLASHDISPQAPKRFLVIPKKHISQIFVAEDDD |
Parental | ESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPP |
ESLLGHLMIVG..C.A.LGL.K.Y.MVVN..S.GGQSVYHVH.HV.GG..MN.PP | |
Retrocopy | ESLLGHLMIVGENCTAGLGLNKDYQMVVNDSSAGGQSVYHVHVHVIGGWWMN*PP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |