RetrogeneDB ID: | retro_mmul_1449 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:98287475..98287892(+) | ||
Located in intron of: | ENSMMUG00000006480 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2554 | ||
Ensembl ID: | ENSMMUG00000022009 | ||
Aliases: | None | ||
Description: | cell division control protein 42 homolog [Source:RefSeq peptide;Acc:NP_001244809] |
Percent Identity: | 69.44 % |
Parental protein coverage: | 73.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRP |
MQ.IKC.VV...A.GKT.L.ISY.TNKF.SE..PT...NYA.V.VM.GGE.Y.LGLFD..GQE.Y.RL.. | |
Retrocopy | MQIIKCAVVSNDAIGKTDLPISYITNKFTSENIPTISNNYA<VMVMVGGESYALGLFDASGQEGYKRLQS |
Parental | LS-YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQ-KP |
LS.YPQTDVFLV.FSVVSPSSF.NVKEKW.P..THHCP.K..FL.V.TQI.L.DDPST..KLAKNK..KP | |
Retrocopy | LS<YPQTDVFLVSFSVVSPSSFKNVKEKWMPVLTHHCP<KDSFL-VKTQIHLTDDPSTLVKLAKNKKWKP |
Parental | ITPE |
ITP. | |
Retrocopy | ITPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 46 .95 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 46 .09 RPM |
SRP007412_cerebellum | 0 .06 RPM | 56 .44 RPM |
SRP007412_heart | 0 .00 RPM | 22 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .33 RPM |
SRP007412_liver | 0 .00 RPM | 9 .82 RPM |
SRP007412_testis | 0 .00 RPM | 8 .74 RPM |