RetrogeneDB ID: | retro_mmul_1900 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:102490585..102491077(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2554 | ||
Ensembl ID: | ENSMMUG00000022009 | ||
Aliases: | None | ||
Description: | cell division control protein 42 homolog [Source:RefSeq peptide;Acc:NP_001244809] |
Percent Identity: | 71.6 % |
Parental protein coverage: | 86.91 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | NKFPSEYVPTVFDNYAVTVMIGGEPYTLGL-FDTAGQEDYDRLRPLSYPQ-TDVFLVCFSVVSPSSFENV |
NKFPS..V.TVFDNYA.TV.IG.EPYT.GL.F.TA.QEDYDRL...SYPQ.TDVFLVCFSVVSP.SF..V | |
Retrocopy | NKFPS**VQTVFDNYAFTVRIGAEPYTPGL<FNTARQEDYDRL*LQSYPQ<TDVFLVCFSVVSPCSF*SV |
Parental | KEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKL-AKNKQKPITPETAEKLARDLKAVKYVECSALTQ |
KEK..PEITHHCPK.PFLLV.TQIDLRDDP....KL..KNKQKPIT.ETAEK.A..LKAV......A.TQ | |
Retrocopy | KEK*WPEITHHCPKAPFLLVMTQIDLRDDP-LLRKL<TKNKQKPITSETAEKPAHNLKAV*CMDGPAPTQ |
Parental | KGLKNVFDEAILAALEPPEPKKSRRCVLL |
..LKN.FD.AILA.LEPPE.KKS....LL | |
Retrocopy | QDLKNGFDKAILADLEPPELKKSCKPMLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .95 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 46 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .44 RPM |
SRP007412_heart | 0 .00 RPM | 22 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .33 RPM |
SRP007412_liver | 0 .00 RPM | 9 .82 RPM |
SRP007412_testis | 0 .00 RPM | 8 .74 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2968 |
Gorilla gorilla | retro_ggor_2057 |
Pongo abelii | retro_pabe_2461 |