RetrogeneDB ID:

retro_mmul_349

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:37110200..37110608(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000029727
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.2554
Ensembl ID:ENSMMUG00000022009
Aliases:None
Description:cell division control protein 42 homolog [Source:RefSeq peptide;Acc:NP_001244809]


Retrocopy-Parental alignment summary:






>retro_mmul_349
ATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAA
ATTTCCATCGGAATATGTACCAACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAACCATATACTCTTG
GACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACAAACAGATGTATTTCTAGTC
TGTTTTTCAGTGGTCTCTCCATCTTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAA
GACTCCTTTCTTGCTTGTTGGGACTCAAATTGATCTCAGAGATGACCCCTCCACTATTGAGAAACTTGCCAAGAACAAAC
AGAAGCCT

ORF - retro_mmul_349 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 71.2 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL
RetrocopyMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL
ParentalSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
RetrocopySYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .11 RPM 46 .95 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 46 .09 RPM
SRP007412_cerebellum 0 .06 RPM 56 .44 RPM
SRP007412_heart 0 .00 RPM 22 .97 RPM
SRP007412_kidney 0 .00 RPM 33 .33 RPM
SRP007412_liver 0 .00 RPM 9 .82 RPM
SRP007412_testis 0 .11 RPM 8 .74 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_349 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_349 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_349 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 25 parental genes, and 97 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000147075 retrocopies
Choloepus hoffmanni ENSCHOG0000000530610 retrocopies
Callithrix jacchus ENSCJAG000000059126 retrocopies
Cavia porcellus ENSCPOG000000065434 retrocopies
Dipodomys ordii ENSDORG000000103743 retrocopies
Equus caballus ENSECAG000000191801 retrocopy
Echinops telfairi ENSETEG000000044431 retrocopy
Felis catus ENSFCAG000000048534 retrocopies
Gorilla gorilla ENSGGOG000000244395 retrocopies
Macaca mulatta ENSMMUG000000188542 retrocopies
Macaca mulatta ENSMMUG000000210754 retrocopies
Macaca mulatta ENSMMUG00000022009 8 retrocopies
Monodelphis domestica ENSMODG000000160783 retrocopies
Mustela putorius furoENSMPUG000000159992 retrocopies
Mus musculus ENSMUSG000000066993 retrocopies
Nomascus leucogenys ENSNLEG000000081984 retrocopies
Oryctolagus cuniculus ENSOCUG000000099861 retrocopy
Otolemur garnettii ENSOGAG000000142611 retrocopy
Pongo abelii ENSPPYG000000017556 retrocopies
Rattus norvegicus ENSRNOG000000135361 retrocopy
Sorex araneus ENSSARG000000051843 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000008054 retrocopies
Tarsius syrichta ENSTSYG0000000067911 retrocopies
Tursiops truncatus ENSTTRG000000057082 retrocopies
Vicugna pacos ENSVPAG000000069193 retrocopies



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