RetrogeneDB ID: | retro_mmul_598 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:30158398..30158919(+) | ||
Located in intron of: | ENSMMUG00000012912 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2554 | ||
Ensembl ID: | ENSMMUG00000022009 | ||
Aliases: | None | ||
Description: | cell division control protein 42 homolog [Source:RefSeq peptide;Acc:NP_001244809] |
Percent Identity: | 85.14 % |
Parental protein coverage: | 91.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | CLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL-RPLSYPQTDVFLVCFSVVS |
C.....TTNKFPSEY.PT..DNYAVT.M.GGEPYTLGLFDTA.QEDY..L...LSYPQTDVFLV.FSVVS | |
Retrocopy | CCW*NNTTNKFPSEYTPTILDNYAVTIMTGGEPYTLGLFDTAEQEDYEGL<MTLSYPQTDVFLVYFSVVS |
Parental | PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE |
PSSFENVKEK.VP.ITHHCPKTP.LLVGTQIDL.DDPSTIEKLAKNKQKPITPETAEKLA.DLKAVKYVE | |
Retrocopy | PSSFENVKEKRVPKITHHCPKTPLLLVGTQIDLKDDPSTIEKLAKNKQKPITPETAEKLAHDLKAVKYVE |
Parental | CSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
CSALTQKGLKNV.DEA.L.ALEPPEPKKSRRC.LL | |
Retrocopy | CSALTQKGLKNVSDEATLTALEPPEPKKSRRCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .95 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 46 .09 RPM |
SRP007412_cerebellum | 0 .06 RPM | 56 .44 RPM |
SRP007412_heart | 0 .00 RPM | 22 .97 RPM |
SRP007412_kidney | 0 .12 RPM | 33 .33 RPM |
SRP007412_liver | 0 .00 RPM | 9 .82 RPM |
SRP007412_testis | 0 .04 RPM | 8 .74 RPM |