RetrogeneDB ID: | retro_mmul_1685 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:70275064..70275511(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2554 | ||
Ensembl ID: | ENSMMUG00000022009 | ||
Aliases: | None | ||
Description: | cell division control protein 42 homolog [Source:RefSeq peptide;Acc:NP_001244809] |
Percent Identity: | 87.92 % |
Parental protein coverage: | 78.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL |
.V.IGG.PYTLGLFDTA.QE.YDRL..LSYPQTDVFLVCFSVVSP.SFENVKEKWVPEITHHCPK.PFLL | |
Retrocopy | SVTIGGDPYTLGLFDTAEQEHYDRLLLLSYPQTDVFLVCFSVVSPPSFENVKEKWVPEITHHCPKPPFLL |
Parental | VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP |
.GTQ..LRDDPS.IEKL.KNKQKPITPETAEKLA.DLKAV.YVECSALTQKGLKNVFD.AILAALEPPE. | |
Retrocopy | AGTQTNLRDDPSIIEKLSKNKQKPITPETAEKLAHDLKAVRYVECSALTQKGLKNVFDKAILAALEPPEL |
Parental | KKSRRCVLL |
KKSRRCVLL | |
Retrocopy | KKSRRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .95 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 46 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .44 RPM |
SRP007412_heart | 0 .00 RPM | 22 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .33 RPM |
SRP007412_liver | 0 .00 RPM | 9 .82 RPM |
SRP007412_testis | 0 .00 RPM | 8 .74 RPM |