RetrogeneDB ID: | retro_mmus_1033 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:74340538..74340877(+) | ||
Located in intron of: | ENSMUSG00000021577 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000090004 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif1 | ||
Ensembl ID: | ENSMUSG00000035530 | ||
Aliases: | Eif1, Sui1-rs1 | ||
Description: | eukaryotic translation initiation factor 1 [Source:MGI Symbol;Acc:MGI:105125] |
Percent Identity: | 79.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD-YDKKKLVKAFKKKFAC |
MS..QNLHSFDPFAD.SKGD.LL.AGTEDY.H.RIQQRNGRKTLTTVQGIA.D.Y.KK.LVKAFKKKFA. | |
Retrocopy | MSPVQNLHSFDPFADVSKGDGLLSAGTEDYTHVRIQQRNGRKTLTTVQGIAND>YHKKELVKAFKKKFAY |
Parental | NGTVIEHPEYGEVIQLQ-GDQRKNICQFLIEIGLAKDDQLKVHGF |
N.T.IEHPEY.EVIQLQ.GDQ.KN.C.FL.E..LAKD.Q.KVHGF | |
Retrocopy | NCTIIEHPEYEEVIQLQ<GDQHKNTCHFLTETELAKDNQQKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 129 .24 RPM |
SRP007412_cerebellum | 0 .04 RPM | 91 .10 RPM |
SRP007412_heart | 0 .06 RPM | 194 .38 RPM |
SRP007412_kidney | 0 .04 RPM | 123 .04 RPM |
SRP007412_liver | 0 .03 RPM | 113 .49 RPM |
SRP007412_testis | 0 .00 RPM | 149 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_571 |