Parental gene:

Eif1, ENSRNOG00000033765

Aliases:Eif1, Sui1-rs1
Description:eukaryotic translation initiation factor 1 [Source:RefSeq peptide;Acc:NP_001099307]
Organism:Rat (Rattus norvegicus)
Coordinates:10:88020701..88022793(+)


>ENSRNOG00000033765
ATGTCCGCTATCCAGAACCTCCACTCTTTCGACCCCTTTGCTGATGCAAGTAAGGGTGATGACCTGCTTCCTGCTGGCAC
TGAGGATTATATCCATATAAGAATTCAACAGAGAAACGGCAGGAAGACCCTTACAACTGTCCAAGGGATCGCTGATGATT
ACGATAAAAAGAAACTAGTGAAGGCGTTTAAGAAGAAATTTGCCTGCAATGGTACTGTAATTGAGCATCCAGAATATGGA
GAAGTAATTCAGCTACAGGGTGACCAGCGCAAGAACATATGCCAGTTCCTGATAGAGATTGGACTGGCTAAGGACGATCA
GCTGAAGGTTCATGGGTTTTAA

Library Parental gene expression (RPM)
SRP017611_liver 68 .25 RPM
SRP017611_kidney 169 .01 RPM
SRP017611_brain 184 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005620 possible_ortholog 9 retrogenes
retro_amel_1335, retro_amel_335, retro_amel_567, retro_amel_575, retro_amel_587, retro_amel_666, retro_amel_782, retro_amel_798, retro_amel_823,
Bos taurus ENSBTAG00000002282 possible_ortholog 1 retrogene
retro_btau_63,
Canis familiaris ENSCAFG00000029584 possible_ortholog 4 retrogenes
retro_cfam_1465, retro_cfam_1479, retro_cfam_359, retro_cfam_655,
Choloepus hoffmanni ENSCHOG00000008378 possible_ortholog 7 retrogenes
retro_chof_1435, retro_chof_170, retro_chof_2236, retro_chof_2293, retro_chof_2625, retro_chof_320, retro_chof_708,
Callithrix jacchus ENSCJAG00000012120 possible_ortholog 6 retrogenes
retro_cjac_1237, retro_cjac_2089, retro_cjac_346, retro_cjac_3815, retro_cjac_600, retro_cjac_84,
Cavia porcellus ENSCPOG00000014350 possible_ortholog 3 retrogenes
retro_cpor_42, retro_cpor_613, retro_cpor_643,
Dasypus novemcinctus ENSDNOG00000007856 possible_ortholog 11 retrogenes
retro_dnov_1098, retro_dnov_1110, retro_dnov_1368, retro_dnov_148, retro_dnov_1516, retro_dnov_1668, retro_dnov_1807, retro_dnov_2062, retro_dnov_2209, retro_dnov_402, retro_dnov_421,
Equus caballus ENSECAG00000012516 possible_ortholog 1 retrogene
retro_ecab_436,
Felis catus ENSFCAG00000024455 possible_ortholog 2 retrogenes
retro_fcat_1555, retro_fcat_74,
Homo sapiens ENSG00000173812 possible_ortholog 2 retrogenes
retro_hsap_1659, retro_hsap_271,
Gorilla gorilla ENSGGOG00000027201 possible_ortholog 2 retrogenes
retro_ggor_1251, retro_ggor_318,
Macropus eugenii ENSMEUG00000015360 possible_ortholog 6 retrogenes
retro_meug_1513, retro_meug_1635, retro_meug_2189, retro_meug_315, retro_meug_749, retro_meug_821,
Myotis lucifugus ENSMLUG00000005077 possible_ortholog 3 retrogenes
retro_mluc_233, retro_mluc_305, retro_mluc_330,
Mustela putorius furo ENSMPUG00000010883 possible_ortholog 6 retrogenes
retro_mputfur_1019, retro_mputfur_1072, retro_mputfur_1239, retro_mputfur_1299, retro_mputfur_41, retro_mputfur_752,
Mus musculus ENSMUSG00000035530 ortholog_one2one 27 retrogenes
retro_mmus_1033, retro_mmus_1063, retro_mmus_1191, retro_mmus_1213, retro_mmus_1286, retro_mmus_1392, retro_mmus_1448, retro_mmus_1652, retro_mmus_2045, retro_mmus_2270, retro_mmus_2604, retro_mmus_2737, retro_mmus_2990, retro_mmus_3043, retro_mmus_3047, retro_mmus_308, retro_mmus_3141, retro_mmus_3164, retro_mmus_3386, retro_mmus_3468, retro_mmus_3471, retro_mmus_3638, retro_mmus_3639, retro_mmus_3963, retro_mmus_512, retro_mmus_585, retro_mmus_840,
Nomascus leucogenys ENSNLEG00000011013 possible_ortholog 3 retrogenes
retro_nleu_1482, retro_nleu_2005, retro_nleu_92,
Otolemur garnettii ENSOGAG00000031577 possible_ortholog 6 retrogenes
retro_ogar_1349, retro_ogar_1701, retro_ogar_1940, retro_ogar_2645, retro_ogar_2899, retro_ogar_856,
Pongo abelii ENSPPYG00000029667 possible_ortholog 1 retrogene
retro_pabe_127,
Pan troglodytes ENSPTRG00000009175 possible_ortholog 3 retrogenes
retro_ptro_1261, retro_ptro_227, retro_ptro_2923,
Pteropus vampyrus ENSPVAG00000010629 possible_ortholog 4 retrogenes
retro_pvam_1152, retro_pvam_471, retro_pvam_665, retro_pvam_923,
Rattus norvegicus ENSRNOG00000032769 within_species_paralog 1 retrogene
retro_rnor_520,
Sarcophilus harrisii ENSSHAG00000005729 possible_ortholog 1 retrogene
retro_shar_42,
Sus scrofa ENSSSCG00000017430 possible_ortholog 6 retrogenes
retro_sscr_1114, retro_sscr_1126, retro_sscr_1192, retro_sscr_394, retro_sscr_402, retro_sscr_922,
Ictidomys tridecemlineatus ENSSTOG00000002719 possible_ortholog 15 retrogenes
retro_itri_1082, retro_itri_1184, retro_itri_1369, retro_itri_1398, retro_itri_1401, retro_itri_1716, retro_itri_1784, retro_itri_1846, retro_itri_220, retro_itri_285, retro_itri_526, retro_itri_606, retro_itri_688, retro_itri_702, retro_itri_977,
Tursiops truncatus ENSTTRG00000017135 possible_ortholog 3 retrogenes
retro_ttru_1664, retro_ttru_224, retro_ttru_315,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_45 87.61 100.00
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2. retro_rnor_65 84.96 100.00
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3. retro_rnor_532 100.00 56.64
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4. retro_rnor_571 78.26 100.00
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5. retro_rnor_1088 79.82 99.12
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6. retro_rnor_1347 93.81 100.00
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7. retro_rnor_1518 68.42 100.00
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8. retro_rnor_1744 85.71 68.14
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9. retro_rnor_1971 91.76 75.22
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10. retro_rnor_2067 62.61 100.00
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11. retro_rnor_2171 58.57 61.06
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12. retro_rnor_2203 99.12 100.00
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13. retro_rnor_2532 77.39 100.00
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14. retro_rnor_2548 67.54 100.00
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15. retro_rnor_2579 92.04 100.00
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Download FASTA sequences of all ENSRNOG00000033765 retrocopies