Parental gene:

ENSCJAG00000012120

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:GL286451.1:484009..486885(-)


>ENSCJAG00000012120
ATGTCCGCTATCCAGAACCTCCACTCTTTCGACCCCTTTGCTGATGCAAGTAAGGGTGATGACCTGCTTCCTGCTGGCAC
TGAGGATTATATCCATATAAGAATTCAACAGAGAAACGGCAGGAAGACCCTTACTACTGTCCAAGGGATCGCTGATGATT
ACGATAAAAAGAAACTAGTGAAGGCGTTTAAGAAGAAGTTTGCCTGCAATGGTACTGTAATTGAACATCCAGAATATGGA
GAAGTAATTCAGCTTCAGGGTGACCAGCGCAAGAACATATGCCAGTTCCTCGTAGAGATTGGACTGGCTAAGGACGATCA
GCTGAAGGTTCATGGGTTTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 28 .49 RPM
SRP051959_skeletal_muscle 73 .55 RPM
SRP051959_lymph_node 20 .59 RPM
SRP051959_lung 27 .02 RPM
SRP051959_liver 30 .89 RPM
SRP051959_kidney 34 .88 RPM
SRP051959_heart 45 .74 RPM
SRP051959_colon 23 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005620 ortholog_one2many 9 retrogenes
retro_amel_1335, retro_amel_335, retro_amel_567, retro_amel_575, retro_amel_587, retro_amel_666, retro_amel_782, retro_amel_798, retro_amel_823,
Bos taurus ENSBTAG00000002282 possible_ortholog 1 retrogene
retro_btau_63,
Canis familiaris ENSCAFG00000029584 ortholog_one2one 4 retrogenes
retro_cfam_1465, retro_cfam_1479, retro_cfam_359, retro_cfam_655,
Cavia porcellus ENSCPOG00000014350 ortholog_one2one 3 retrogenes
retro_cpor_42, retro_cpor_613, retro_cpor_643,
Dasypus novemcinctus ENSDNOG00000007856 ortholog_one2many 11 retrogenes
retro_dnov_1098, retro_dnov_1110, retro_dnov_1368, retro_dnov_148, retro_dnov_1516, retro_dnov_1668, retro_dnov_1807, retro_dnov_2062, retro_dnov_2209, retro_dnov_402, retro_dnov_421,
Dipodomys ordii ENSDORG00000013853 possible_ortholog 4 retrogenes
retro_dord_349, retro_dord_350, retro_dord_663, retro_dord_753,
Felis catus ENSFCAG00000024455 possible_ortholog 2 retrogenes
retro_fcat_1555, retro_fcat_74,
Homo sapiens ENSG00000173812 ortholog_one2many 2 retrogenes
retro_hsap_1659, retro_hsap_271,
Gorilla gorilla ENSGGOG00000027201 ortholog_one2one 2 retrogenes
retro_ggor_1251, retro_ggor_318,
Loxodonta africana ENSLAFG00000002852 possible_ortholog 2 retrogenes
retro_lafr_386, retro_lafr_877,
Macropus eugenii ENSMEUG00000015360 ortholog_one2many 6 retrogenes
retro_meug_1513, retro_meug_1635, retro_meug_2189, retro_meug_315, retro_meug_749, retro_meug_821,
Myotis lucifugus ENSMLUG00000005077 possible_ortholog 3 retrogenes
retro_mluc_233, retro_mluc_305, retro_mluc_330,
Mustela putorius furo ENSMPUG00000010883 possible_ortholog 6 retrogenes
retro_mputfur_1019, retro_mputfur_1072, retro_mputfur_1239, retro_mputfur_1299, retro_mputfur_41, retro_mputfur_752,
Mus musculus ENSMUSG00000035530 possible_ortholog 27 retrogenes
retro_mmus_1033, retro_mmus_1063, retro_mmus_1191, retro_mmus_1213, retro_mmus_1286, retro_mmus_1392, retro_mmus_1448, retro_mmus_1652, retro_mmus_2045, retro_mmus_2270, retro_mmus_2604, retro_mmus_2737, retro_mmus_2990, retro_mmus_3043, retro_mmus_3047, retro_mmus_308, retro_mmus_3141, retro_mmus_3164, retro_mmus_3386, retro_mmus_3468, retro_mmus_3471, retro_mmus_3638, retro_mmus_3639, retro_mmus_3963, retro_mmus_512, retro_mmus_585, retro_mmus_840,
Nomascus leucogenys ENSNLEG00000011013 possible_ortholog 3 retrogenes
retro_nleu_1482, retro_nleu_2005, retro_nleu_92,
Otolemur garnettii ENSOGAG00000031577 ortholog_one2many 6 retrogenes
retro_ogar_1349, retro_ogar_1701, retro_ogar_1940, retro_ogar_2645, retro_ogar_2899, retro_ogar_856,
Pongo abelii ENSPPYG00000029667 ortholog_one2many 1 retrogene
retro_pabe_127,
Pan troglodytes ENSPTRG00000009175 possible_ortholog 3 retrogenes
retro_ptro_1261, retro_ptro_227, retro_ptro_2923,
Pteropus vampyrus ENSPVAG00000010629 possible_ortholog 4 retrogenes
retro_pvam_1152, retro_pvam_471, retro_pvam_665, retro_pvam_923,
Rattus norvegicus ENSRNOG00000033765 possible_ortholog 15 retrogenes
retro_rnor_1088, retro_rnor_1347, retro_rnor_1518, retro_rnor_1744, retro_rnor_1971, retro_rnor_2067, retro_rnor_2171, retro_rnor_2203, retro_rnor_2532, retro_rnor_2548, retro_rnor_2579, retro_rnor_45, retro_rnor_532, retro_rnor_571, retro_rnor_65,
Sorex araneus ENSSARG00000006287 possible_ortholog 1 retrogene
retro_sara_36,
Sarcophilus harrisii ENSSHAG00000005729 possible_ortholog 1 retrogene
retro_shar_42,
Sus scrofa ENSSSCG00000017430 ortholog_one2one 6 retrogenes
retro_sscr_1114, retro_sscr_1126, retro_sscr_1192, retro_sscr_394, retro_sscr_402, retro_sscr_922,
Ictidomys tridecemlineatus ENSSTOG00000002719 possible_ortholog 15 retrogenes
retro_itri_1082, retro_itri_1184, retro_itri_1369, retro_itri_1398, retro_itri_1401, retro_itri_1716, retro_itri_1784, retro_itri_1846, retro_itri_220, retro_itri_285, retro_itri_526, retro_itri_606, retro_itri_688, retro_itri_702, retro_itri_977,
Tursiops truncatus ENSTTRG00000017135 ortholog_one2many 3 retrogenes
retro_ttru_1664, retro_ttru_224, retro_ttru_315,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_84 96.46 100.00
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2. retro_cjac_346 96.46 100.00
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3. retro_cjac_600 98.23 100.00
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4. retro_cjac_1237 78.07 99.12
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5. retro_cjac_2089 77.19 100.00
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6. retro_cjac_3815 99.12 100.00
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Download FASTA sequences of all ENSCJAG00000012120 retrocopies