RetrogeneDB ID: | retro_mmus_2045 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:72570480..72570822(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000080865 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif1 | ||
Ensembl ID: | ENSMUSG00000035530 | ||
Aliases: | Eif1, Sui1-rs1 | ||
Description: | eukaryotic translation initiation factor 1 [Source:MGI Symbol;Acc:MGI:105125] |
Percent Identity: | 85.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTT-VQGIADDYDKKKLVKAFKKKFAC |
MS.IQ.L.SF.PFADASKGDDL.PAG.ED.IHIRIQQRNGRKTLTT.VQGIADDY.KKKLVK.FKKKFAC | |
Retrocopy | MSTIQYLYSFYPFADASKGDDLHPAGSEDSIHIRIQQRNGRKTLTTTVQGIADDYNKKKLVKVFKKKFAC |
Parental | NGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF |
NGTV.EHPEYGEVIQ.QGD.RK..CQFL.E.GLAKDDQLKVHGF | |
Retrocopy | NGTVVEHPEYGEVIQPQGDHRKSMCQFLLETGLAKDDQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 129 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 91 .10 RPM |
SRP007412_heart | 0 .03 RPM | 194 .38 RPM |
SRP007412_kidney | 0 .00 RPM | 123 .04 RPM |
SRP007412_liver | 0 .00 RPM | 113 .49 RPM |
SRP007412_testis | 0 .00 RPM | 149 .52 RPM |