RetrogeneDB ID: | retro_mmus_3963 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | Y:1268547..1268885(-) | ||
Located in intron of: | ENSMUSG00000069045 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif1 | ||
Ensembl ID: | ENSMUSG00000035530 | ||
Aliases: | Eif1, Sui1-rs1 | ||
Description: | eukaryotic translation initiation factor 1 [Source:MGI Symbol;Acc:MGI:105125] |
Percent Identity: | 86.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
MS.I.NL.SFDPFADASKGDD.LPAGTEDYIH.RIQQRNGRKTLTTVQGI.D.YD.KKLVKAFKKKFACN | |
Retrocopy | MSTILNLNSFDPFADASKGDDMLPAGTEDYIHVRIQQRNGRKTLTTVQGITDEYD*KKLVKAFKKKFACN |
Parental | GTVIEHPEYGEVIQLQGDQ-RKNICQFLIEIGLAKDDQLKVHGF |
GTVIEHPEY.EVIQ.QGD...KNI.QFLIEIGLAKDDQL.VHGF | |
Retrocopy | GTVIEHPEYREVIQVQGDS<CKNIHQFLIEIGLAKDDQLMVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .16 RPM | 129 .24 RPM |
SRP007412_cerebellum | 0 .30 RPM | 91 .10 RPM |
SRP007412_heart | 0 .09 RPM | 194 .38 RPM |
SRP007412_kidney | 0 .29 RPM | 123 .04 RPM |
SRP007412_liver | 0 .16 RPM | 113 .49 RPM |
SRP007412_testis | 0 .09 RPM | 149 .52 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001YKA | POLR2A | Y:1269613..1269933 |
ENCFF001YKA | POLR2A | Y:1268768..1268797 |