RetrogeneDB ID: | retro_mmus_840 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:3438514..3438850(+) | ||
Located in intron of: | ENSMUSG00000037486 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif1 | ||
Ensembl ID: | ENSMUSG00000035530 | ||
Aliases: | Eif1, Sui1-rs1 | ||
Description: | eukaryotic translation initiation factor 1 [Source:MGI Symbol;Acc:MGI:105125] |
Percent Identity: | 92.86 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
MSAIQNLHSFDPFADASKG.DLLPAGTEDYIH..IQQRN.RKTLTTVQGIA..YDKKKLVKAFKKKFACN | |
Retrocopy | MSAIQNLHSFDPFADASKGGDLLPAGTEDYIHVKIQQRNVRKTLTTVQGIAYEYDKKKLVKAFKKKFACN |
Parental | GTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHG |
GTVIEHPEYGEVIQLQGDQRKNICQFLIE.GLAKDDQLK.HG | |
Retrocopy | GTVIEHPEYGEVIQLQGDQRKNICQFLIETGLAKDDQLKAHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 129 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 91 .10 RPM |
SRP007412_heart | 0 .03 RPM | 194 .38 RPM |
SRP007412_kidney | 0 .04 RPM | 123 .04 RPM |
SRP007412_liver | 0 .03 RPM | 113 .49 RPM |
SRP007412_testis | 0 .00 RPM | 149 .52 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_22973 | 55 libraries | 51 libraries | 746 libraries | 186 libraries | 34 libraries |