RetrogeneDB ID: | retro_cjac_2089 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 22:10279468..10279800(-) | ||
Located in intron of: | ENSCJAG00000006309 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000012120 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
MS...NLHSF..FA.A.KGDDLLPAGTEDYIHI..QQRNGRKTLTTVQ.IADDYDKKK.VKAF..KFACN | |
Retrocopy | MSTM*NLHSFNLFAGAGKGDDLLPAGTEDYIHIISQQRNGRKTLTTVQVIADDYDKKKPVKAF--KFACN |
Parental | GTVIEHPEYGEVIQLQGDQ-RKNICQFLVEIGLAKDDQLKVHGF |
G.V.E.PE.GE.IQLQGD..R..I.QFLVE.GLAKD..LKVHGF | |
Retrocopy | GIVTERPECGEGIQLQGDH<RSHIRQFLVETGLAKDNRLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 23 .78 RPM |
SRP051959_heart | 0 .00 RPM | 45 .74 RPM |
SRP051959_kidney | 0 .02 RPM | 34 .88 RPM |
SRP051959_liver | 0 .00 RPM | 30 .89 RPM |
SRP051959_lung | 0 .05 RPM | 27 .02 RPM |
SRP051959_lymph_node | 0 .00 RPM | 20 .59 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 73 .55 RPM |
SRP051959_spleen | 0 .04 RPM | 28 .49 RPM |