RetrogeneDB ID: | retro_mmus_3164 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:122841730..122842069(+) | ||
Located in intron of: | ENSMUSG00000092329 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000095762 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif1 | ||
Ensembl ID: | ENSMUSG00000035530 | ||
Aliases: | Eif1, Sui1-rs1 | ||
Description: | eukaryotic translation initiation factor 1 [Source:MGI Symbol;Acc:MGI:105125] |
Percent Identity: | 93.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
MSAIQNLHSFDPFADASKGD.LLP.GTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN | |
Retrocopy | MSAIQNLHSFDPFADASKGDGLLPTGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
Parental | GTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF |
GTVIEH.EYGEV.QLQGDQRKNICQFLIE.GLA.DDQLK.HGF | |
Retrocopy | GTVIEHAEYGEVLQLQGDQRKNICQFLIETGLAEDDQLKAHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .49 RPM | 129 .24 RPM |
SRP007412_cerebellum | 1 .09 RPM | 91 .10 RPM |
SRP007412_heart | 0 .22 RPM | 194 .38 RPM |
SRP007412_kidney | 0 .13 RPM | 123 .04 RPM |
SRP007412_liver | 0 .11 RPM | 113 .49 RPM |
SRP007412_testis | 0 .82 RPM | 149 .52 RPM |