RetrogeneDB ID: | retro_pabe_127 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:26210061..26210403(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000005715 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSPPYG00000029667 | ||
Aliases: | EIF1, SUI1 | ||
Description: | Eukaryotic translation initiation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5RFF4] |
Percent Identity: | 99.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN | |
Retrocopy | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
Parental | GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
GTVIEHPEYGEVIQLQGDQRKNICQFLVE.GLAKDDQLKVHGF | |
Retrocopy | GTVIEHPEYGEVIQLQGDQRKNICQFLVETGLAKDDQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .55 RPM | 138 .61 RPM |
SRP007412_cerebellum | 0 .61 RPM | 197 .24 RPM |
SRP007412_heart | 0 .33 RPM | 128 .30 RPM |
SRP007412_kidney | 0 .73 RPM | 134 .01 RPM |
SRP007412_liver | 0 .89 RPM | 149 .92 RPM |