RetrogeneDB ID: | retro_cpor_42 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_6:1673640..1673982(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000020499 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSCPOG00000014350 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
MSAIQNLHSFDPFADASKGDDLLPAG.EDYIH.RIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN | |
Retrocopy | MSAIQNLHSFDPFADASKGDDLLPAGIEDYIHMRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
Parental | GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
GTVIEHPEYGEVIQLQGDQRKNICQFLVE.GLAKDDQLKVHGF | |
Retrocopy | GTVIEHPEYGEVIQLQGDQRKNICQFLVETGLAKDDQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 67 .18 RPM |
SRP017611_kidney | 0 .21 RPM | 121 .86 RPM |
SRP017611_liver | 0 .17 RPM | 79 .39 RPM |
SRP040447_lung | 0 .23 RPM | 134 .10 RPM |
SRP040447_skeletal_muscle | 0 .52 RPM | 248 .82 RPM |