RetrogeneDB ID: | retro_mmus_1523 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:60397922..60398321(-) | ||
Located in intron of: | ENSMUSG00000055540 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000087636 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5g1 | ||
Ensembl ID: | ENSMUSG00000006057 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9) [Source:MGI Symbol;Acc:MGI:107653] |
Percent Identity: | 86.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQTTKALLISPALIRSCTRGLIRPVSASLLSRPEAPSKQPSCSSSPLQVARREFQTSVISRDIDTAAKFI |
MQTTK.LLISP.LIRS..RGLIRPVSASLLSRPEAPSKQ.S..SS.LQVAR.E.QTSVIS.DIDTAAKFI | |
Retrocopy | MQTTKTLLISPVLIRSSIRGLIRPVSASLLSRPEAPSKQASFRSSSLQVARWESQTSVISWDIDTAAKFI |
Parental | GAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
GAG.ATVGV...G.GIGTVFGS.IIGYARN.SLKQQLFSYAILGFALSEAMGLFCLM.AFLILFAM | |
Retrocopy | GAGSATVGV---GPGIGTVFGS*IIGYARNLSLKQQLFSYAILGFALSEAMGLFCLMIAFLILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .42 RPM | 41 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 40 .69 RPM |
SRP007412_heart | 0 .03 RPM | 473 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 174 .27 RPM |
SRP007412_liver | 0 .00 RPM | 57 .73 RPM |
SRP007412_testis | 0 .00 RPM | 17 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000006341 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016880 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007352 | 7 retrocopies | |
Cavia porcellus | ENSCPOG00000009017 | 2 retrocopies | |
Equus caballus | ENSECAG00000019908 | 1 retrocopy | |
Felis catus | ENSFCAG00000002344 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000004537 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005744 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011738 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000013395 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015341 | 3 retrocopies | |
Mus musculus | ENSMUSG00000006057 | 5 retrocopies | |
Mus musculus | ENSMUSG00000062683 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007235 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000003575 | 5 retrocopies |