Parental gene: | ATP5G1, ENSCAFG00000016880 |
| Aliases: | None |
| Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 9:25122622..25125856(+) |
>ENSCAFG00000016880
ATGCAGACCACCGGGGCATTACTCATTCCTCCGGCTCTGATCCGCTGCTGTACCAGGGATCTTATCAGGCCTTTGTCTGC
CTCCTTCTTGAGTAGGCCAGAGATCCCATCTAAACAGCCATCCTACAGCAGCTCCCCACTCCAGGTGGCCCGACGGGAGT
TCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCAGCCAAGTTTATTGGCGCTGGGGCTGCCACAGTTGGTGTGGCT
GGTTCAGGGGCTGGTATTGGGACAGTGTTTGGCAGCTTGATCATTGGCTATGCCAGGAACCCGTCTCTCAAGCAGCAGCT
CTTCTCCTATGCCATTCTGGGCTTTGCCCTGTCTGAGGCCATGGGGCTCTTCTGTTTGATGGTCGCCTTCCTCATCCTCT
TCGCCATGTGA
ATGCAGACCACCGGGGCATTACTCATTCCTCCGGCTCTGATCCGCTGCTGTACCAGGGATCTTATCAGGCCTTTGTCTGC
CTCCTTCTTGAGTAGGCCAGAGATCCCATCTAAACAGCCATCCTACAGCAGCTCCCCACTCCAGGTGGCCCGACGGGAGT
TCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCAGCCAAGTTTATTGGCGCTGGGGCTGCCACAGTTGGTGTGGCT
GGTTCAGGGGCTGGTATTGGGACAGTGTTTGGCAGCTTGATCATTGGCTATGCCAGGAACCCGTCTCTCAAGCAGCAGCT
CTTCTCCTATGCCATTCTGGGCTTTGCCCTGTCTGAGGCCATGGGGCTCTTCTGTTTGATGGTCGCCTTCCTCATCCTCT
TCGCCATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 60 .42 RPM |
| SRP017611_kidney | 738 .56 RPM |
| SRP017611_liver | 116 .89 RPM |
| SRP012049_cerebellum | 65 .69 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000006341 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000013366 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007352 | ortholog_one2many | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000009017 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000019908 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000002344 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000159199 | ortholog_one2one | 8 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001626 | ortholog_one2one | 8 retrogenes | |
| Loxodonta africana | ENSLAFG00000004537 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000005744 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000011738 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000013395 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000015341 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000006057 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000002718 | ortholog_one2one | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000008909 | ortholog_one2one | 9 retrogenes | |
| Pan troglodytes | ENSPTRG00000009364 | ortholog_one2one | 8 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007235 | ortholog_one2many | 5 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000013404 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000003575 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_336 | 77.54 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_647 | 62.50 | 58.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1583 | 95.45 | 80.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1621 | 99.09 | 80.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1882 | 69.75 | 86.03 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000016880 retrocopies