RetrogeneDB ID: | retro_mmus_2725 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:37541535..37541964(+) | ||
Located in intron of: | ENSMUSG00000038641 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Slmo2 | ||
Ensembl ID: | ENSMUSG00000016257 | ||
Aliases: | Slmo2, 2310042G06Rik, AA407013 | ||
Description: | slowmo homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1913640] |
Percent Identity: | 84.83 % |
Parental protein coverage: | 73.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | HSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVTRTMELKST-NISFTNMVSVDERLTYKPHLQD |
HSHRLLSTEW.LPSIV.SLIGAARTKTYVQEHSVVDPV.RT.ELK.T.NISFTNMVS.DERLTYK.H.QD | |
Retrocopy | HSHRLLSTEWDLPSIVNSLIGAARTKTYVQEHSVVDPVKRTTELKFT>NISFTNMVSGDERLTYKTHPQD |
Parental | PEKTVLTQEALITVKGVSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAEIEELA-ASARGSIRTPMA |
PEKTVLTQE.LIT.K.VS.SSYLEGL.ASTISSN..KG.EAMEWVIHKLNAEIEELA..SAR.SIRTPMA | |
Retrocopy | PEKTVLTQETLITGKRVSFSSYLEGLIASTISSNVNKGQEAMEWVIHKLNAEIEELA<TSARESIRTPMA |
Parental | AAAAL |
.AAA. | |
Retrocopy | VAAAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 30 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 27 .66 RPM |
SRP007412_heart | 0 .03 RPM | 46 .07 RPM |
SRP007412_kidney | 0 .81 RPM | 37 .86 RPM |
SRP007412_liver | 7 .67 RPM | 28 .21 RPM |
SRP007412_testis | 0 .00 RPM | 21 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018905 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000014548 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000009651 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000000300 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014907 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007560 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000016608 | 5 retrocopies | |
Mus musculus | ENSMUSG00000016257 | 2 retrocopies |
retro_mmus_2725 , retro_mmus_630,
|
Mus musculus | ENSMUSG00000024530 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005621 | 8 retrocopies | |
Ochotona princeps | ENSOPRG00000002550 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000046644 | 2 retrocopies | |
Sorex araneus | ENSSARG00000004671 | 2 retrocopies |