RetrogeneDB ID: | retro_cjac_2921 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 7:100927325..100927654(+) | ||
Located in intron of: | ENSCJAG00000016938 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSCJAG00000018905 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 79.28 % |
Parental protein coverage: | 51.67 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSLRLLSTEWGLPSIVKSLI- |
MKIWT.EH.F...WE..TTAAMQK.PNPM.PSVVGVDVLDR.IDPSGKLHS.RLLST..GLP.IVK..I. | |
Retrocopy | MKIWT*EHIFNNSWEIATTAAMQK*PNPMDPSVVGVDVLDRNIDPSGKLHSHRLLSTR*GLPFIVKPFIL |
Parental | -GAARTK-TYVQEHSVVDPVEKTMELKSTNISFTNMVSVDE |
.GAARTK.TYV.E.SVVDPVEKTMEL.STNISFTNMVSV.E | |
Retrocopy | SGAARTK<TYVHEYSVVDPVEKTMELNSTNISFTNMVSVYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .09 RPM | 42 .22 RPM |
SRP051959_heart | 0 .14 RPM | 17 .26 RPM |
SRP051959_kidney | 0 .18 RPM | 29 .57 RPM |
SRP051959_liver | 0 .00 RPM | 26 .27 RPM |
SRP051959_lung | 0 .05 RPM | 26 .71 RPM |
SRP051959_lymph_node | 0 .02 RPM | 42 .46 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 11 .73 RPM |
SRP051959_spleen | 0 .15 RPM | 29 .47 RPM |