RetrogeneDB ID: | retro_cjac_1286 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 14:59001036..59001618(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022369 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSCJAG00000018905 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 94.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSLRLLSTEWGLPSIVKSLIG |
MKIWTSEHVFDHPWETVTTAAMQKYPNP.NPSVVGVDVLDRHIDPSGKLHS.RLLSTEWGLPSIVKSLIG | |
Retrocopy | MKIWTSEHVFDHPWETVTTAAMQKYPNPTNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSLIG |
Parental | AARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVSLSSY |
AARTK.YVQEHSVVDPVEKTMELKSTNISFTN.V.V.ERLIYKPHPQD.EKTVLTQEAII.VKGVSLSSY | |
Retrocopy | AARTKSYVQEHSVVDPVEKTMELKSTNISFTNVVPVGERLIYKPHPQDSEKTVLTQEAIIAVKGVSLSSY |
Parental | LEGLMASTISSNASKGREAMEWVIHKLNAEIEELTASARGSIRTPMAAAAFAEK |
LEGLMASTISSNAS.GREAMEWVIHKLNAEIEELTASARGS..TPMAAAAFAEK | |
Retrocopy | LEGLMASTISSNASRGREAMEWVIHKLNAEIEELTASARGSKQTPMAAAAFAEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 42 .22 RPM |
SRP051959_heart | 0 .00 RPM | 17 .26 RPM |
SRP051959_kidney | 0 .00 RPM | 29 .57 RPM |
SRP051959_liver | 0 .00 RPM | 26 .27 RPM |
SRP051959_lung | 0 .02 RPM | 26 .71 RPM |
SRP051959_lymph_node | 0 .00 RPM | 42 .46 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 11 .73 RPM |
SRP051959_spleen | 0 .00 RPM | 29 .47 RPM |