RetrogeneDB ID: | retro_cjac_3171 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 8:118835353..118835889(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSCJAG00000018905 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 83.89 % |
Parental protein coverage: | 92.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSLRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVV |
ETVTTA.MQKYPNP.NPSVVGVDVLDR.IDPSGK.HS.RLLSTEWG.PSIVKSLIGAARTKT..QEHSV. | |
Retrocopy | ETVTTATMQKYPNPVNPSVVGVDVLDRYIDPSGKFHSQRLLSTEWGPPSIVKSLIGAARTKT*GQEHSVA |
Parental | DPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVS-LSSYLEGLMASTISSNA |
D.VEK..ELKSTNISFTNMVSVDER..YKPHPQDPEKT.LTQEAII.VK.VS.LSSYLEGLMAS.ISSN. | |
Retrocopy | DLVEKAIELKSTNISFTNMVSVDERFVYKPHPQDPEKTILTQEAIIPVKEVS<LSSYLEGLMASMISSNT |
Parental | SKGREAMEWVIHKLNAEIEELTASARGSIRTPMAAAAFAE |
SKG.EAMEWVI.KLNAEI.ELTASARG.IR...A.AAFA. | |
Retrocopy | SKGQEAMEWVIYKLNAEIQELTASARGNIRIQLASAAFAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 42 .22 RPM |
SRP051959_heart | 0 .00 RPM | 17 .26 RPM |
SRP051959_kidney | 0 .00 RPM | 29 .57 RPM |
SRP051959_liver | 0 .09 RPM | 26 .27 RPM |
SRP051959_lung | 0 .02 RPM | 26 .71 RPM |
SRP051959_lymph_node | 0 .02 RPM | 42 .46 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 11 .73 RPM |
SRP051959_spleen | 0 .00 RPM | 29 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3783 |
Pan troglodytes | retro_ptro_2564 |
Gorilla gorilla | retro_ggor_2545 |
Pongo abelii | retro_pabe_3089 |
Macaca mulatta | retro_mmul_1644 |