RetrogeneDB ID: | retro_mmul_2123 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:176506259..176506630(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2500 | ||
Ensembl ID: | ENSMMUG00000007560 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.11 % |
Parental protein coverage: | 61.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFT-NMVSVDERLIYKPHPQDPDKTVLTQEAIITVKG |
KSLIG.ARTKT...E.SVV.P.EKT.ELKSTNIS...NMVSVDERLI.KPHPQDP....L........KG | |
Retrocopy | KSLIGTARTKTHELEYSVVYPIEKTTELKSTNISLK<NMVSVDERLIHKPHPQDPXXXLL*LKKP*SLKG |
Parental | VSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAEIEELTASARGTIRTPMAAAA |
.S.SSY.EGLMA.T.SSNA.KG..A.EW..H......E...A..RG.IRTP..AAA | |
Retrocopy | GSFSSYPEGLMARTVSSNANKG-QALEWGTHR*DVKNEASVAPTRGGIRTPLVAAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .34 RPM | 4 .03 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 5 .32 RPM |
SRP007412_cerebellum | 0 .39 RPM | 6 .72 RPM |
SRP007412_heart | 0 .00 RPM | 4 .24 RPM |
SRP007412_kidney | 0 .12 RPM | 8 .10 RPM |
SRP007412_liver | 0 .04 RPM | 2 .06 RPM |
SRP007412_testis | 0 .00 RPM | 10 .21 RPM |