RetrogeneDB ID:

retro_mluc_845

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429779:9095380..9095927(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000024196
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000014907
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_845
CATCCATGGGAAACTGTTACAATAGCCGCAATGCAGAAATATCCAACCCTATGAACCCAAGCGTGGTTGGAGTCAATGTA
TTGGACAGACATGCAGATCCTTCTGGAAAGTTGCACAGCCACAGACTGCTCAGCACAGAGTGGGGCCTCCCTTCCATTGT
GAGATCTCTGATTGGTGGGACAAGAACCAAAACATATGTGCAAGAACATTCTGTAGTTGACCCTGTAGAGAAAACAACGG
AACTTAAATCCACTAATATTTCATTTACAAATATGGTTTCAGTAGATGAGAGACTTAGATAAAACCACATCTGCAGGGCC
CAGAAAGAACTGTTTTGACTCAAGAGGCCATCATCACTGTGAAAGGAGTGAGCCTCAGTAGTTACCTGGAAGGGCTGATG
GCGAGCATGGCATCCTCAAATGCTCGTAAAGGCCGGGAAGCAGTGGAATGGGTGATACATAAATTAAACGCTGAGATTGA
AGAATTGACGCCTTCAACAAGAGGAAGCATAAGGACGCCAATGGCGGCAGCAGCATTTGTAGAGAAA

ORF - retro_mluc_845 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.19 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalHPWETVTTAAMQKYP-NPMNPSVVGVDVLDRHVDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQE
HPWETVT.AAMQKYP.NPMNPSVVGV.VLDRH.DPSGKLHSHRLLSTEWGLPSIV.SLIG..RTKTYVQE
RetrocopyHPWETVTIAAMQKYP<NPMNPSVVGVNVLDRHADPSGKLHSHRLLSTEWGLPSIVRSLIGGTRTKTYVQE
ParentalHSVVDPVEKTMELKSTNISFTNMVSVDERLI-YKPHPQDPERTVLTQEAIITVKGVSLSSYLEGLMASTI
HSVVDPVEKT.ELKSTNISFTNMVSVDERL...KPH.Q.PERTVLTQEAIITVKGVSLSSYLEGLMAS..
RetrocopyHSVVDPVEKTTELKSTNISFTNMVSVDERLR<IKPHLQGPERTVLTQEAIITVKGVSLSSYLEGLMASMA
ParentalSSNASKGREAMEWVIHKLNAEIEELTASARGSMRTPMAAAAFVEK
SSNA.KGREA.EWVIHKLNAEIEELT.S.RGS.RTPMAAAAFVEK
RetrocopySSNARKGREAVEWVIHKLNAEIEELTPSTRGSIRTPMAAAAFVEK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_845 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 32 parental genes, and 119 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000044023 retrocopies
retro_btau_1006, retro_btau_1346, retro_btau_996,
Canis familiaris ENSCAFG000000122201 retrocopy
retro_cfam_1293,
Callithrix jacchus ENSCJAG000000189054 retrocopies
retro_cjac_1286, retro_cjac_2921, retro_cjac_3171, retro_cjac_3236,
Cavia porcellus ENSCPOG000000123974 retrocopies
retro_cpor_1285, retro_cpor_1412, retro_cpor_456, retro_cpor_468,
Dasypus novemcinctus ENSDNOG000000145483 retrocopies
retro_dnov_1402, retro_dnov_2032, retro_dnov_2311,
Equus caballus ENSECAG000000005131 retrocopy
retro_ecab_409,
Erinaceus europaeus ENSEEUG000000036974 retrocopies
retro_eeur_244, retro_eeur_34, retro_eeur_389, retro_eeur_406,
Echinops telfairi ENSETEG000000096513 retrocopies
retro_etel_1130, retro_etel_1262, retro_etel_632,
Felis catus ENSFCAG000000314311 retrocopy
retro_fcat_1499,
Homo sapiens ENSG000001011666 retrocopies
retro_hsap_310, retro_hsap_3166, retro_hsap_3167, retro_hsap_3311, retro_hsap_3783, retro_hsap_4227,
Gorilla gorilla ENSGGOG000000048035 retrocopies
retro_ggor_1349, retro_ggor_1350, retro_ggor_2544, retro_ggor_2545, retro_ggor_2830,
Loxodonta africana ENSLAFG000000003001 retrocopy
retro_lafr_700,
Microcebus murinus ENSMICG0000001490212 retrocopies
retro_mmur_101, retro_mmur_1111, retro_mmur_1143, retro_mmur_1299, retro_mmur_1304, retro_mmur_1318, retro_mmur_1391, retro_mmur_1400, retro_mmur_1604, retro_mmur_512, retro_mmur_659, retro_mmur_912,
Myotis lucifugus ENSMLUG00000014907 2 retrocopies
retro_mluc_1887, retro_mluc_845 ,
Macaca mulatta ENSMMUG000000075604 retrocopies
retro_mmul_1155, retro_mmul_1644, retro_mmul_2123, retro_mmul_539,
Monodelphis domestica ENSMODG000000166085 retrocopies
retro_mdom_1596, retro_mdom_1619, retro_mdom_1620, retro_mdom_1655, retro_mdom_405,
Mustela putorius furoENSMPUG000000070751 retrocopy
retro_mputfur_1586,
Mus musculus ENSMUSG000000162572 retrocopies
retro_mmus_2725, retro_mmus_630,
Nomascus leucogenys ENSNLEG000000095793 retrocopies
retro_nleu_1118, retro_nleu_2497, retro_nleu_2498,
Oryctolagus cuniculus ENSOCUG000000056218 retrocopies
retro_ocun_1944, retro_ocun_1954, retro_ocun_455, retro_ocun_486, retro_ocun_549, retro_ocun_619, retro_ocun_775, retro_ocun_926,
Otolemur garnettii ENSOGAG0000001338210 retrocopies
retro_ogar_1037, retro_ogar_1650, retro_ogar_2233, retro_ogar_2972, retro_ogar_3009, retro_ogar_3120, retro_ogar_3281, retro_ogar_3378, retro_ogar_3389, retro_ogar_3392,
Ochotona princeps ENSOPRG000000025508 retrocopies
retro_opri_1069, retro_opri_1090, retro_opri_141, retro_opri_216, retro_opri_45, retro_opri_663, retro_opri_683, retro_opri_770,
Pongo abelii ENSPPYG000000111827 retrocopies
retro_pabe_1462, retro_pabe_2631, retro_pabe_2632, retro_pabe_2731, retro_pabe_3089, retro_pabe_3411, retro_pabe_371,
Pan troglodytes ENSPTRG000000136825 retrocopies
retro_ptro_2160, retro_ptro_2273, retro_ptro_251, retro_ptro_252, retro_ptro_2564,
Pteropus vampyrus ENSPVAG000000052262 retrocopies
retro_pvam_1075, retro_pvam_1445,
Rattus norvegicus ENSRNOG000000466442 retrocopies
retro_rnor_422, retro_rnor_423,
Sorex araneus ENSSARG000000046712 retrocopies
retro_sara_282, retro_sara_430,
Sus scrofa ENSSSCG000000075253 retrocopies
retro_sscr_161, retro_sscr_258, retro_sscr_959,
Tupaia belangeri ENSTBEG000000004931 retrocopy
retro_tbel_1407,
Tarsius syrichta ENSTSYG000000125332 retrocopies
retro_tsyr_2061, retro_tsyr_250,
Tursiops truncatus ENSTTRG000000084172 retrocopies
retro_ttru_621, retro_ttru_818,
Vicugna pacos ENSVPAG000000010442 retrocopies
retro_vpac_224, retro_vpac_359,


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