RetrogeneDB ID: | retro_mdom_1620 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:196429734..196430315(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSMODG00000016608 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 85.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLA-RHIDPTGKLHSHRLLSTEWGMPSIVKSLI |
MKIW.S.HVFDH.WETVT.AAMQK.PNPMNPSVVGV.V.A..H.DPT.KLHSHRLLSTEWGMPSIVKSLI | |
Retrocopy | MKIWMSKHVFDHLWETVTIAAMQKNPNPMNPSVVGVKVVA<KHLDPTRKLHSHRLLSTEWGMPSIVKSLI |
Parental | GAARTKTYVQEHSVVDPVEKTMELKSTNISFTNLVSVDERLIYKPHPQEPGKTILTQEAIITVKGVSLSS |
..AR.K.YVQ.HSVVDPVEKTM..KSTNISFTNLVSVDERLIYKPHPQ.PGKTILTQEAIITVKGVSLSS | |
Retrocopy | SVARIKPYVQGHSVVDPVEKTMDFKSTNISFTNLVSVDERLIYKPHPQGPGKTILTQEAIITVKGVSLSS |
Parental | YLEGLMESTISSNANKGREAMEWVINKLNAEIEELTASARGSMRTPMAAAAFVEK |
Y.EGLMESTI.SNANKG.EAMEWVINK.NAE.E..TASARGSMRTPMA.AAFVE. | |
Retrocopy | YPEGLMESTILSNANKGCEAMEWVINK*NAETEAWTASARGSMRTPMAVAAFVEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 37 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 38 .20 RPM |
SRP007412_heart | 0 .00 RPM | 189 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 105 .35 RPM |
SRP007412_liver | 0 .00 RPM | 186 .79 RPM |
SRP007412_testis | 0 .00 RPM | 146 .15 RPM |