RetrogeneDB ID: | retro_nleu_1146 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397283.1:332555..333348(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 85.77 % |
Parental protein coverage: | 79.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY |
GNPI.IFQERDPSKIK..DAGAEYVVEST..FTTMEKAGAHLQ.GAKRVIISAPSADAPMFVMGVNHEK. | |
Retrocopy | GNPIIIFQERDPSKIKRADAGAEYVVESTSIFTTMEKAGAHLQRGAKRVIISAPSADAPMFVMGVNHEKH |
Parental | DNSLKIVSNASCTTNCLAPL-AKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPA |
DN.LKIVSNASCTTNCLAP...KVIHDN.GIVEGLMTTV.AITATQKTVDGPS.KL..D...ALQNIIPA | |
Retrocopy | DNGLKIVSNASCTTNCLAPR<SKVIHDNSGIVEGLMTTVYAITATQKTVDGPSRKL*CDSYEALQNIIPA |
Parental | STGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEG-PLKGILGYTE |
STGAAKAV.KVIPELNGKLT.MAF..P.A.VSVVDLTC.LEKP.KYDDIKKVVK.AS...PLKGI.GYTE | |
Retrocopy | STGAAKAVDKVIPELNGKLTCMAFGAPAAKVSVVDLTCCLEKPVKYDDIKKVVKRASDA<PLKGIWGYTE |
Parental | HQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMSHMASKE |
HQVVSSDFN.DTHSSTFD.GAGIALNDHFVKL.SWYDNEFGYSNRV.DLM..MASKE | |
Retrocopy | HQVVSSDFNRDTHSSTFDVGAGIALNDHFVKLVSWYDNEFGYSNRVADLMAYMASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |