RetrogeneDB ID: | retro_nleu_1712 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397306.1:5272008..5272621(+) | ||
Located in intron of: | ENSNLEG00000005533 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 70.53 % |
Parental protein coverage: | 60.9 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | VMGVNHEKYDNSLKIVSNASCTTNCLA-PLAKVIHDNFGIVEGLMTTVHAITATQKT-VDGPSGKLWRDG |
.MG.NHEKY.....I.S.ASCTTNCLA..L.K.IHD..GI.EGLMTTV.AITATQ.T..DG.SGKL.R.G | |
Retrocopy | LMGMNHEKYESNPTIISIASCTTNCLA>SLTKIIHDSSGIMEGLMTTVPAITATQET>MDGSSGKL*RHG |
Parental | RGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEG- |
.GALQNIIPASTG...AVGK.I.ELNG...GMAF..PT..VS.VDLTC.LE.PAKYDD.KK.VKQASEG. | |
Retrocopy | CGALQNIIPASTGTSMAVGKDILELNGEIIGMAFLIPTTSVSIVDLTCCLE*PAKYDDFKKMVKQASEG< |
Parental | PLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMSHMASKE |
P....LGYTEHQVV..DFN.DT.SSTF..GA.I.L...FVKLISWYDN.F.YSN.VVDLM.HMASKE | |
Retrocopy | PFGDTLGYTEHQVVPCDFNDDTPSSTFNSGASIDLSNRFVKLISWYDN*FCYSNGVVDLMVHMASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |