RetrogeneDB ID: | retro_nleu_1883 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397313.1:15015353..15016365(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 69.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFI-DLNYMVYM---FQYDSTHGKFHGTVKAENGK |
M.KVK..VNGFG.IG.LVT.A..NSGKVDIV.INDPFI..L....YM...FQYDSTHG.FHGTVKAEN.K | |
Retrocopy | MVKVKARVNGFGPIGCLVTKATYNSGKVDIVTINDPFI<SLHIPYYMVYIFQYDSTHGEFHGTVKAENRK |
Parental | LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVN |
LVI.GNP.TIFQ...P.KIK.GDAG..Y...S.GVFTTMEK..AHLQG..K..IIS.PSAD.P.FVMG.N | |
Retrocopy | LVISGNPTTIFQKLNPTKIK*GDAGTKYIIDSSGVFTTMEKCVAHLQGPVKWIIISNPSADSPIFVMGMN |
Parental | HEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNI |
HEKYDNSLKI....SCTTNC.APLAK.IHDNF..VEGLMTTV.A..ATQKTVD.PS.KLW.....A..NI | |
Retrocopy | HEKYDNSLKITHSVSCTTNCSAPLAKIIHDNFDLVEGLMTTVNARIATQKTVDSPSVKLWHNSCRAQRNI |
Parental | IPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQ-ASEGPLKGILG |
I.ASTG..KAVGK.I.EL.GK.T.MAF.VPT.N..V..LTC..EK.AKYD.IK.VVKQ.ASEG..KGIL. | |
Retrocopy | ILASTGTLKAVGKCINELHGKITSMAFQVPTTNMLVMNLTCPQEKHAKYDNIKQVVKQ<ASEGCHKGILC |
Parental | YTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMSHMASKE |
YTE.QVVSS....DTHSSTF..G..IAL.DHFVKLI..YDNEFGYSNR...LM.H.ASKE | |
Retrocopy | YTENQVVSSSLTTDTHSSTFNPGTSIALSDHFVKLIFSYDNEFGYSNRMMNLMAHIASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |