RetrogeneDB ID: | retro_nleu_465 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397265.1:25179248..25180251(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 75.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVIN |
M.KVK..VNGFG..G..VTRAAFN.GKVD.V.INDPF.D.N.M..M.QYD.THGKFHGT.KAEN.KLVI. | |
Retrocopy | MVKVKTKVNGFGHVGCMVTRAAFNFGKVDTVTINDPFVDFNCMIHMVQYDFTHGKFHGTIKAENRKLVIS |
Parental | GNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY |
GNPITIF.E.DP.KIKWGDAGA.YVV.STG...T.EKAG..L..G.KRVIISA.SAD.P.F..G.NHEKY | |
Retrocopy | GNPITIF*E*DPTKIKWGDAGADYVV*STGILNTHEKAGDVLEEGGKRVIISALSADTPLFMIGMNHEKY |
Parental | DNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAS |
.NSLKI.S.ASCTTNCLAPLAKVIHDNFGI.E.L.TTVHAITATQ.T.DGPSGKLW.DG..A.Q.IIPAS | |
Retrocopy | KNSLKIISKASCTTNCLAPLAKVIHDNFGIMEELITTVHAITATQETLDGPSGKLWHDGHVAVQDIIPAS |
Parental | TGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASE-GPLKGILGYT-E |
T..AKA.G.V.PELNGKL.GMAF.V.TANV.V.DLTC.LEKPAKY.DIKKVVKQ..E.GPL.GILGY..E | |
Retrocopy | TSGAKAMGQVTPELNGKLIGMAFHVSTANVLVMDLTCHLEKPAKYNDIKKVVKQELE<GPLMGILGYM<E |
Parental | HQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMSHMASKE |
HQVVSSDFN..T.SS.F.AGAGIALN.HFV.LISWYDNEFGYSNRVVDL..H.AS.E | |
Retrocopy | HQVVSSDFNGNTPSSAFNAGAGIALNNHFVNLISWYDNEFGYSNRVVDLVAHKASEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |