RetrogeneDB ID: | retro_nleu_1951 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397318.1:4283574..4284577(-) | ||
Located in intron of: | ENSNLEG00000004316 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDP-FIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI |
M.KVK.GVNGFGR.G.L.TRAAF.S.KVDIVAINDP.FIDLNYMVYMF.YDSTHGKFHGTVKAE.GKLVI | |
Retrocopy | MVKVKAGVNGFGRVGHLLTRAAFDSSKVDIVAINDP<FIDLNYMVYMFKYDSTHGKFHGTVKAEKGKLVI |
Parental | NGNPITIFQERDPSKIKWGDAGAEYVVESTGV-FTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHE |
NGNPITIFQE.DPSKIK.GDAGAEYVV.ST.V.FT..E.......G.....I.SAPSADAPMFVMG.NH. | |
Retrocopy | NGNPITIFQEQDPSKIK*GDAGAEYVVKSTSV>FTMEEAGADLQGGAKRVII-SAPSADAPMFVMGMNHK |
Parental | KYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIP |
KYDN.L.I...ASCTTNCL.PL.KVIHDNFGIV.....TVHAITA.QK.VDG.SGKLW.DG.G.L.N... | |
Retrocopy | KYDNRLNIINYASCTTNCLVPLGKVIHDNFGIVGRFKNTVHAITAIQKIVDGLSGKLWCDGCGVL*NVTS |
Parental | ASTGAAKAVGK-VIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYT |
ASTG..KAVG..VI..LN.KLT.M.F.VP..NVSV.DLTC.LE.PAKYDDIKKV.K.ASEGP.KGI.G.T | |
Retrocopy | ASTGTDKAVGR>VISKLNKKLTDMGFCVPITNVSVMDLTCHLENPAKYDDIKKVGK*ASEGPPKGIWGNT |
Parental | EHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMSHMASKE |
EHQV.SSDFN.DTHSSTFDAGAGIALNDHFVKLISWYDNEFGY.NRVVDLM.HMASKE | |
Retrocopy | EHQVFSSDFNRDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYRNRVVDLMAHMASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |