RetrogeneDB ID: | retro_nleu_1711 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397306.1:4962362..4963151(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 80. % |
Parental protein coverage: | 78.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVIN |
M.KVK..VN.F..IG.LVTRAAFNSGKVDIVAINDPF.DLNYMVYMF.YDSTH.KFH...K.ENGKLVIN | |
Retrocopy | MVKVKARVNEFSCIGHLVTRAAFNSGKVDIVAINDPFVDLNYMVYMF*YDSTHSKFHSIIKLENGKLVIN |
Parental | GNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISA-PSADAPMFVMGVNHEK |
GNPITIFQERDP.KIKWG.AG..Y.VESTGVFTTM.KA..HL.GGAK.VIISA.PSAD.PMFVMGVNHEK | |
Retrocopy | GNPITIFQERDPTKIKWGAAGTNYIVESTGVFTTMKKARTHLDGGAKKVIISA<PSADIPMFVMGVNHEK |
Parental | YDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPA |
Y.N.LKIVSNASCTTNCL.PLAKVIHDN.GI.E..MTTVHAI..TQKTVDGPSGKLW..G.G..QNII.A | |
Retrocopy | YKNGLKIVSNASCTTNCLVPLAKVIHDNSGIMEEFMTTVHAINDTQKTVDGPSGKLWHNGCGIFQNIIFA |
Parental | STGAAKAVGKVIPELNGKLTGMAFRV-PTANVSVVDLTCRLEKPAKYDDIKKVVK |
STG..KAVGKVIPELN.K.TGM.F.V.PT..VSV.DL.C.LEKPAKYDDIKKVVK | |
Retrocopy | STGTDKAVGKVIPELNRKVTGMIFHV>PTTTVSVMDLICCLEKPAKYDDIKKVVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |