RetrogeneDB ID: | retro_nleu_374 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397264.1:1434907..1435782(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 85.47 % |
Parental protein coverage: | 87.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHL |
M.Y.FQYDSTHGKFHGT.KAENGKL.I.GNPITIFQERD.SKIKWGDAGAEY.V.ST..FTTMEKAGA.L | |
Retrocopy | MIYLFQYDSTHGKFHGTIKAENGKLLIKGNPITIFQERDLSKIKWGDAGAEYMVKSTSIFTTMEKAGAYL |
Parental | QGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT |
QGGAKR.IISAPSADAPMF.MGVN.EKYDNSL.I.SNASCTTNCLAPLAKVIHDNFGI.EGLMTTVHAI. | |
Retrocopy | QGGAKRIIISAPSADAPMFMMGVNREKYDNSLEIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAIA |
Parental | ATQKTVDG-PSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEK |
ATQKTVD..P.G..W.DGR.ALQNIIPAS.GAAKAV.KVIPELN.KLTG.AFRVPT.NV.VVDLTC.LEK | |
Retrocopy | ATQKTVDS>PLGN-WCDGRRALQNIIPASPGAAKAVDKVIPELNRKLTGKAFRVPTTNVLVVDLTCHLEK |
Parental | PAKYDDIKK-VVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNE-FG |
PAKYDDIKK..VKQASEGP.KGILGYTEH.V.SS.FNSDTHSSTFDAGAGIALN.HFVKLISW.DNE..G | |
Retrocopy | PAKYDDIKK<MVKQASEGPFKGILGYTEH*VISSKFNSDTHSSTFDAGAGIALNNHFVKLISWHDNE<IG |
Parental | YSNRVVDLMSHMASKE |
YSNRVVDLM.HMASKE | |
Retrocopy | YSNRVVDLMAHMASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |