RetrogeneDB ID: | retro_nleu_2272 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397340.1:8651218..8652226(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 86.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVIN |
M.KVKV.VNGFGRIGRLV.RA.FNS.KVDI..I.DPFIDLNYMVYMFQYDSTHGKFHGT.KAEN.KLVI. | |
Retrocopy | MVKVKVRVNGFGRIGRLVSRATFNSRKVDIITISDPFIDLNYMVYMFQYDSTHGKFHGTIKAENRKLVIS |
Parental | GNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY |
GNPITIFQERDPSKIKWGDAGAEY..E.TG.FTTMEKAGAHLQG.AK.VIISAPSADAPMF.MGVNHEKY | |
Retrocopy | GNPITIFQERDPSKIKWGDAGAEYIMEPTGIFTTMEKAGAHLQG*AKWVIISAPSADAPMFIMGVNHEKY |
Parental | DNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAS |
DNSLKI.SNASC.TNCL.PLAKV.HDNFGIVEGLMTTVHAITATQKTVDGPSGKLW.D..G.LQNIIPAS | |
Retrocopy | DNSLKIASNASCATNCLGPLAKVLHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWHDDGGTLQNIIPAS |
Parental | TGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY-TEH |
.G.AKAVGKVIPELNGKLTGMAF.VPTANVSV.DLT..LEKP.KYD.IKKVVK.ASEGPL.GILGY.TEH | |
Retrocopy | SGTAKAVGKVIPELNGKLTGMAFCVPTANVSVMDLTYHLEKPTKYDGIKKVVKEASEGPL*GILGYNTEH |
Parental | QVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMSHMASKE |
QVVS.DFNSDTHSSTFD.GA.IALN..FVKLISWYDNEFGYSNRV.DLM.H.ASKE | |
Retrocopy | QVVSFDFNSDTHSSTFDVGASIALNNDFVKLISWYDNEFGYSNRVEDLMAHKASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |