RetrogeneDB ID: | retro_nleu_1641 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397302.1:19281076..19282070(+) | ||
Located in intron of: | ENSNLEG00000009463 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 84.13 % |
Parental protein coverage: | 99.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDST-HGKFHG-TVKAENGKLVIN |
KVK.GVNGFGRIG.LVTR.AFNSGKVDIVAIND.FIDLNYMVYMFQ.D.T.HGKFH..T.KA.NGKLVI. | |
Retrocopy | KVKAGVNGFGRIGYLVTRVAFNSGKVDIVAINDRFIDLNYMVYMFQ*DFT<HGKFHA<TIKAANGKLVIS |
Parental | GNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY |
GNPITIFQERDPSKIKWG.A.AEYVVESTGVFT.ME.AGAHLQ.GAKRVIIS....DAPM.VMG.NHEKY | |
Retrocopy | GNPITIFQERDPSKIKWGNADAEYVVESTGVFTPMETAGAHLQEGAKRVIISPHFVDAPMLVMGMNHEKY |
Parental | DNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAS |
DNSLKI.SNASCTTNCLAPLA.VIHDNFGI.EGLMTTVH.ITATQKTVDGPSGKLWRDG..A.QNIIPAS | |
Retrocopy | DNSLKIISNASCTTNCLAPLANVIHDNFGIMEGLMTTVHTITATQKTVDGPSGKLWRDGCRAVQNIIPAS |
Parental | TGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQ |
TGAAKAVGK...ELNGKLTGMAF.V.TA.V.V..LTC.LEKPAKYDDIKKVVKQ...GPLKGILGYTEHQ | |
Retrocopy | TGAAKAVGKALSELNGKLTGMAFCVTTAKVLVMNLTCHLEKPAKYDDIKKVVKQTLKGPLKGILGYTEHQ |
Parental | VVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMSHMASK |
.VSSDFNS.THSSTF..GAGIALN.HFVK.ISWY.NEFGYSN.V.DLM.HMASK | |
Retrocopy | AVSSDFNSNTHSSTFNVGAGIALNNHFVKIISWYSNEFGYSNKVGDLMAHMASK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |