RetrogeneDB ID: | retro_nleu_1516 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397297.1:4609035..4609583(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 64.36 % |
Parental protein coverage: | 55.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVIN-GN |
VKVGVNGFG.I...VTRAAF....VD.VA.ND.F..LN..VYMFQYD.T...F..TVKAEN.KL.I..G. | |
Retrocopy | VKVGVNGFGHIRCPVTRAAFITITVDTVANNDSFTGLNFIVYMFQYDFTYVRFNDTVKAENRKLAIK>GS |
Parental | PITIFQERDPSKIKWGDAGAEYVVESTGVFTTM-EKAGAHLQGGAKRVIISAPSADAP-MFVMGVNHEKY |
P........P......D.GAEYVV..TGVF....E....HL.GGAK.V.ISA.SADAP.MFVM.VN.EKY | |
Retrocopy | PCLFSRSEIPLPNR--DVGAEYVVKFTGVFSIL<EETDDHLRGGAKAVLISASSADAP<MFVMSVNCEKY |
Parental | DNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTV |
..SLKI.SN.SCTTNCLAPLAK.IHDNFGI..GLMTT.HAITAT.KTV | |
Retrocopy | GVSLKIFSNVSCTTNCLAPLAKFIHDNFGIMLGLMTTFHAITATEKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |