Parental gene: | NARF, ENSBTAG00000018178 |
| Aliases: | None |
| Description: | nuclear prelamin A recognition factor [Source:RefSeq peptide;Acc:NP_001095788] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 19:50743492..50760548(-) |
>ENSBTAG00000018178
ATGAAGTGTGAGCACTGCACGCGGAAGGAATGTAGTAAAAAAACAAAAACCGATGACCAAGAGAATGCATCAGTCGATGT
ACCAAGTCCAGCCCAGGAGAATGGAGAGAAGGGAGAATTCCATAAATTGGCTGATGCCAAGATATTTCTGAGTGACTGCC
TGGCCTGTGACAGCTGTGTGTCTGCGGAGGAAGGAATCCAGGTTTCCCAGCAGAACGCCAAGGACTTCTTCCAAGTTCTG
AACCTTAACAAGAAATGTGATACCTCGGAGCACAAGGTGCTGGCAGTGTCCCTGTGTCCTCAGTCTTTGCCTTATTTTGC
TGCTAAATTCAGCCTCAGTGTGACTGATGCATCCAGAAGGCTCTGTGGTTTCCTCAAAAGTCTTGGGGTGCATTATGTCT
TTGATACAACGATCGCTGCAGATTTCAGCATCCTGGAGAGTCAGAAAGAGTTTGTGCGTCGATTCCGCCAGCACAATGAG
GAAGAGCCTGCGTTACCCATGCTGACCTCTGCCTGTCCTGGCTGGGTCCGCTATGCTGAGCGGGTGCTGGGTCATCCCGT
CACCCCCCACCTCTGCACTGCCAAGTCTCCCCAGCAGATCATGGGATCCCTGGTGAAGGACTACTTTGCCAGACGTCAGA
ACCTGTCCCCAGACAAGATTTTCCATGTCATCGTGGCACCGTGCTACGACAAGAAGCTGGAGGCCCTTCAGGAAGACGTC
CTCACAGCCTCTCGGGGTTCCCGGGGCACTGACTGCGTGCTGACCTCAGGTGAAATAGCTCAGATGATGGAGCAGAGTGA
CGTCTCAGTGAGAGAGGCTGCCCTGGACACGCTGTTTGGCGACGTGAAGGAGGAGGAGCTGAGGCGCCACGATGGAGCCG
GCTCTGACGGGTACCTGGCACACATCTTCAGACATGCGGCCAAGGAGCTGTTCAATGAGGATGTGGGGGAGGTCACCTAC
CGGGCCCTGAGGAACAAAGATTTCCAGGAGGTCACCCTCGAGAAGAGCGGAGAGGTCCTCTTGCGCTTTGCTGCAGCTTA
TGGCTTTCGAAACATCCAGAACGTGGTCCTAAAGCTGAAGAAGGGCAAGTTCCCATACCACTTTGTGGAGGTTCTTGCCT
GTGCTGGCGGATGCCTTAATGGCAGAGGCCAAGCCCAGACCGCGGACGGGCGCACAGACAAGGCCCTGCTGCAGAAGATG
AAAGGCATCTACGCCGACATCCCCGTGCAGCTCCCGGAGGCCAGCACCCACGTGCAGGAGTTGTACCAGGAGTGGCTGGA
TGGCACCGACTCCCCCCGTGTCCAGGAAGCCCTGCATACTGCGTACCAGGGCCCAGGGCAGCCCGCTGACAGCCGAGACA
TCAAGTGGTGA
ATGAAGTGTGAGCACTGCACGCGGAAGGAATGTAGTAAAAAAACAAAAACCGATGACCAAGAGAATGCATCAGTCGATGT
ACCAAGTCCAGCCCAGGAGAATGGAGAGAAGGGAGAATTCCATAAATTGGCTGATGCCAAGATATTTCTGAGTGACTGCC
TGGCCTGTGACAGCTGTGTGTCTGCGGAGGAAGGAATCCAGGTTTCCCAGCAGAACGCCAAGGACTTCTTCCAAGTTCTG
AACCTTAACAAGAAATGTGATACCTCGGAGCACAAGGTGCTGGCAGTGTCCCTGTGTCCTCAGTCTTTGCCTTATTTTGC
TGCTAAATTCAGCCTCAGTGTGACTGATGCATCCAGAAGGCTCTGTGGTTTCCTCAAAAGTCTTGGGGTGCATTATGTCT
TTGATACAACGATCGCTGCAGATTTCAGCATCCTGGAGAGTCAGAAAGAGTTTGTGCGTCGATTCCGCCAGCACAATGAG
GAAGAGCCTGCGTTACCCATGCTGACCTCTGCCTGTCCTGGCTGGGTCCGCTATGCTGAGCGGGTGCTGGGTCATCCCGT
CACCCCCCACCTCTGCACTGCCAAGTCTCCCCAGCAGATCATGGGATCCCTGGTGAAGGACTACTTTGCCAGACGTCAGA
ACCTGTCCCCAGACAAGATTTTCCATGTCATCGTGGCACCGTGCTACGACAAGAAGCTGGAGGCCCTTCAGGAAGACGTC
CTCACAGCCTCTCGGGGTTCCCGGGGCACTGACTGCGTGCTGACCTCAGGTGAAATAGCTCAGATGATGGAGCAGAGTGA
CGTCTCAGTGAGAGAGGCTGCCCTGGACACGCTGTTTGGCGACGTGAAGGAGGAGGAGCTGAGGCGCCACGATGGAGCCG
GCTCTGACGGGTACCTGGCACACATCTTCAGACATGCGGCCAAGGAGCTGTTCAATGAGGATGTGGGGGAGGTCACCTAC
CGGGCCCTGAGGAACAAAGATTTCCAGGAGGTCACCCTCGAGAAGAGCGGAGAGGTCCTCTTGCGCTTTGCTGCAGCTTA
TGGCTTTCGAAACATCCAGAACGTGGTCCTAAAGCTGAAGAAGGGCAAGTTCCCATACCACTTTGTGGAGGTTCTTGCCT
GTGCTGGCGGATGCCTTAATGGCAGAGGCCAAGCCCAGACCGCGGACGGGCGCACAGACAAGGCCCTGCTGCAGAAGATG
AAAGGCATCTACGCCGACATCCCCGTGCAGCTCCCGGAGGCCAGCACCCACGTGCAGGAGTTGTACCAGGAGTGGCTGGA
TGGCACCGACTCCCCCCGTGTCCAGGAAGCCCTGCATACTGCGTACCAGGGCCCAGGGCAGCCCGCTGACAGCCGAGACA
TCAAGTGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 29 .19 RPM |
| SRP017611_kidney | 24 .66 RPM |
| SRP017611_liver | 10 .04 RPM |
| ERP005899_muscle | 31 .88 RPM |
| ERP005899_liver | 6 .20 RPM |
| SRP030211_testis | 44 .09 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000012976 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000011246 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000009329 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017740 | ortholog_one2many | 23 retrogenes |
retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,
|
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_820 | 73.08 | 62.06 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000018178 retrocopies