RetrogeneDB ID:

retro_mluc_1700

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429887:2669727..2670827(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000025478
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000017740
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1700
GTGACCGCAGAAGAAGGAGTCCAAGTTTCTCAACAGAACACCAAGGACATCTTCCATGTTCTGAACCTTAATAAGCAATG
TGATACCTCACAGCACAAAGTGCTGGCAGTGTCCATGTGTCCTTAGTCTCTGCCTTATTTTGCTGCTAAATTCAGCCTCA
GTGTCACTGATGCATCCAGAAGGCTCTGCGGCTTTCTCAAAAGCCTTGGGGCGCACTGTCTTTGACATGAAGATAGCTGT
GGACTTCAGCTTCTTGGAGAGTCAGAAGGAATTTGTGCGTCGGTACTGCCAGCACCATGAGGAAGAGCCCCGGCTACCCA
TGCTGACCTCCGCCTGCCCCGGCTGGGACCAATATGCAGAGCGTGTGCTGGGTCACCCCATCACCCCCCACCTCTGCACG
GCCAAGTCTCCCCAGCAGATCATGGGCTCTCTGGTGAAGGATTACTTCACCAGACGGCAGAACCTGTCCCCAGACAAGAT
TTTCCATGTCATTGTGGCCCCGGGTTATGACAAGAAACTGGAGGCCCTTTGAGAAGATGTTCCCACAGCTTTACATAGTT
CCCAGGGTGCTGACTGCGTGTTAACCTCAGGTGAAATTGTCCAGATAATGGAGCAAAGTGACCTCGCCTGGAATGACGCT
GCCTTGGACACTCTGTTTGGACACATGAAGGAGAAGGAGGTGAGGCTCCACAAAGGTGCCAGCTCCGATGGGTACCTGGC
GCACATCGTCAGGCACATGGCCAAGGAGCTGTTCAACGAGGATGTGGGAGTGCTCACCTACCGCACCCTGAGGAACAAAG
ACTTTCAGGAGGTCACCCTTGAAGGGGACGGAGAGGTTCTGCTATGCTTGAGGCTGCTAATGGCTTTTGGAACATCCAGA
AGTGGTCCTGAAGCTGTAGAGGGGCAAGTTCCCCTGTCACTTTGTGGAGGTCCTGGCCTGCACCAGGGATGCCTAAGTGG
CAGGGGCCAGGCCCAGGCTGAGGATGGGCATGCAGACAGGGCACTGCTGCAGCAGATGGAAGACATCTACGCTGCCATCC
CAGTGTGGCTCCCCAGAGACCAGCGCCCGTGTGCAGGAGCTGTACCAGGAGTGGGTGGGG

ORF - retro_mluc_1700 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.51 %
Parental protein coverage: 81. %
Number of stop codons detected: 3
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalVTAEEGVQVSQQNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKS-L
VTAEEGVQVSQQN.KD.F.VLNLNK.CD.SQHKVLAVS.CP.SLPYFAAKFSLSVTDASRRLCGFLKS.L
RetrocopyVTAEEGVQVSQQNTKDIFHVLNLNKQCDTSQHKVLAVSMCP*SLPYFAAKFSLSVTDASRRLCGFLKS>L
ParentalGVHYVFDMTIAADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQ
G...VFDM.IA.DFS.LESQKEFVRRY.QH.EEEPRLPMLTSACPGW..YAERVLGHPITPHLCTAKSPQ
RetrocopyG-RTVFDMKIAVDFSFLESQKEFVRRYCQHHEEEPRLPMLTSACPGWDQYAERVLGHPITPHLCTAKSPQ
ParentalQIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDL
QIMGSLVKDYF.RRQNLSPDKIFHVIVAP.YDKKLEAL.EDVPTALHSS.GADCVLTSGEIVQ.MEQSDL
RetrocopyQIMGSLVKDYFTRRQNLSPDKIFHVIVAPGYDKKLEAL*EDVPTALHSSQGADCVLTSGEIVQIMEQSDL
ParentalSADDALVDTLLTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLER
...DA..DTL...FG..KE.EVR.H.GASSDGYLAHI.RH.AKELFNEDVG.LTYR.LRNKDFQEVTLE.
RetrocopyAWNDAALDTL---FGHMKEKEVRLHKGASSDGYLAHIVRHMAKELFNEDVGVLTYRTLRNKDFQEVTLEG
ParentalDGEVLL-RFAAAYGFRNIQ-NVVLKLKRGKFPYHFVEVLACA-GGCLSGRGQAQAEDGRADRALLRQMEG
DGEVLL....AA.GF.NIQ..VVLKL.RGKFP.HFVEVLAC...GCLSGRGQAQAEDG.ADRALL.QME.
RetrocopyDGEVLL<MLEAANGFWNIQ<EVVLKL*RGKFPCHFVEVLACT<QGCLSGRGQAQAEDGHADRALLQQMED
ParentalIYAAIPV-RPPETSAHVQELYQEWLG
IYAAIPV...PETSA.VQELYQEW.G
RetrocopyIYAAIPV>GSPETSARVQELYQEWVG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1700 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000181781 retrocopy
Canis familiaris ENSCAFG000000129761 retrocopy
Dasypus novemcinctus ENSDNOG000000112461 retrocopy
Echinops telfairi ENSETEG000000093291 retrocopy
Myotis lucifugus ENSMLUG00000017740 23 retrocopies



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