RetrogeneDB ID: retro_mluc_1700

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429887:2669727..2670827(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025478
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1700
GTGACCGCAGAAGAAGGAGTCCAAGTTTCTCAACAGAACACCAAGGACATCTTCCATGTTCTGAACCTTAATAAGCAATG
TGATACCTCACAGCACAAAGTGCTGGCAGTGTCCATGTGTCCTTAGTCTCTGCCTTATTTTGCTGCTAAATTCAGCCTCA
GTGTCACTGATGCATCCAGAAGGCTCTGCGGCTTTCTCAAAAGCCTTGGGGCGCACTGTCTTTGACATGAAGATAGCTGT
GGACTTCAGCTTCTTGGAGAGTCAGAAGGAATTTGTGCGTCGGTACTGCCAGCACCATGAGGAAGAGCCCCGGCTACCCA
TGCTGACCTCCGCCTGCCCCGGCTGGGACCAATATGCAGAGCGTGTGCTGGGTCACCCCATCACCCCCCACCTCTGCACG
GCCAAGTCTCCCCAGCAGATCATGGGCTCTCTGGTGAAGGATTACTTCACCAGACGGCAGAACCTGTCCCCAGACAAGAT
TTTCCATGTCATTGTGGCCCCGGGTTATGACAAGAAACTGGAGGCCCTTTGAGAAGATGTTCCCACAGCTTTACATAGTT
CCCAGGGTGCTGACTGCGTGTTAACCTCAGGTGAAATTGTCCAGATAATGGAGCAAAGTGACCTCGCCTGGAATGACGCT
GCCTTGGACACTCTGTTTGGACACATGAAGGAGAAGGAGGTGAGGCTCCACAAAGGTGCCAGCTCCGATGGGTACCTGGC
GCACATCGTCAGGCACATGGCCAAGGAGCTGTTCAACGAGGATGTGGGAGTGCTCACCTACCGCACCCTGAGGAACAAAG
ACTTTCAGGAGGTCACCCTTGAAGGGGACGGAGAGGTTCTGCTATGCTTGAGGCTGCTAATGGCTTTTGGAACATCCAGA
AGTGGTCCTGAAGCTGTAGAGGGGCAAGTTCCCCTGTCACTTTGTGGAGGTCCTGGCCTGCACCAGGGATGCCTAAGTGG
CAGGGGCCAGGCCCAGGCTGAGGATGGGCATGCAGACAGGGCACTGCTGCAGCAGATGGAAGACATCTACGCTGCCATCC
CAGTGTGGCTCCCCAGAGACCAGCGCCCGTGTGCAGGAGCTGTACCAGGAGTGGGTGGGG

Alignment

ORF - retro_mluc_1700 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.51 %
• Parental protein coverage: 81. %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  VTAEEGVQVSQQNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKS-L
          VTAEEGVQVSQQN.KD.F.VLNLNK.CD.SQHKVLAVS.CP.SLPYFAAKFSLSVTDASRRLCGFLKS.L
Retrocopy VTAEEGVQVSQQNTKDIFHVLNLNKQCDTSQHKVLAVSMCP*SLPYFAAKFSLSVTDASRRLCGFLKS>L

Parental  GVHYVFDMTIAADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQ
          G...VFDM.IA.DFS.LESQKEFVRRY.QH.EEEPRLPMLTSACPGW..YAERVLGHPITPHLCTAKSPQ
Retrocopy G-RTVFDMKIAVDFSFLESQKEFVRRYCQHHEEEPRLPMLTSACPGWDQYAERVLGHPITPHLCTAKSPQ

Parental  QIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDL
          QIMGSLVKDYF.RRQNLSPDKIFHVIVAP.YDKKLEAL.EDVPTALHSS.GADCVLTSGEIVQ.MEQSDL
Retrocopy QIMGSLVKDYFTRRQNLSPDKIFHVIVAPGYDKKLEAL*EDVPTALHSSQGADCVLTSGEIVQIMEQSDL

Parental  SADDALVDTLLTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLER
          ...DA..DTL...FG..KE.EVR.H.GASSDGYLAHI.RH.AKELFNEDVG.LTYR.LRNKDFQEVTLE.
Retrocopy AWNDAALDTL---FGHMKEKEVRLHKGASSDGYLAHIVRHMAKELFNEDVGVLTYRTLRNKDFQEVTLEG

Parental  DGEVLL-RFAAAYGFRNIQ-NVVLKLKRGKFPYHFVEVLACA-GGCLSGRGQAQAEDGRADRALLRQMEG
          DGEVLL....AA.GF.NIQ..VVLKL.RGKFP.HFVEVLAC...GCLSGRGQAQAEDG.ADRALL.QME.
Retrocopy DGEVLL<MLEAANGFWNIQ<EVVLKL*RGKFPCHFVEVLACT<QGCLSGRGQAQAEDGHADRALLQQMED

Parental  IYAAIPV-RPPETSAHVQELYQEWLG
          IYAAIPV...PETSA.VQELYQEW.G
Retrocopy IYAAIPV>GSPETSARVQELYQEWVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1700 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700 , retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,