RetrogeneDB ID: retro_mluc_1083

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429793:9907015..9908353(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024177
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1083
ATGAAGTGTGATCACTGCACACAGAAGGAATGTAGTAAAAAAACAAAAACAGATGACCAAGAGAATGCCGCAGTCAATAT
TTGGAGTCTGGCTCAGGAGAACGGAGAGAAGGGAGAAATCCATAAGTTGGCCGATGCCAAGATATTTCTGAGTGACTGCC
TGGCGTGTGACAGTTGTGTGGCTGCAGAGGAAGGAGTCCAAGTTTCTCAACAGAACACCAAGGACTTCTTCTGTGCTCTG
AACCTTAATAAGAAATGTGATACCTCACAGCACAAGGTGCTGGCAGTGTCCATGTGTCCTTAGTCTCTGCCTTATTTTGC
TGCTAAACTCAGCCTCAGTGTCACTGATGCATCTAGAAGGCTCTGCGGCTTTCTCAAATGCCTTGGGGTGCACTGTCTTT
GACATGAAGATAGCTGCCGACTTCAGCATCCTGGAGAGTCAGAAGGAATTTGTGCGTCGGTACTGCCAGCACCGTGAGGA
AGAGCCCCGGCTACCCATGCTGACCTCTGCCTGCTGGGACCGATATGCAGAGCGTGTGCTGGGTCACCCCATCACCCCCA
CCTCTGAACGGCCAAGTCTCCCAAGCAGATCATGGGCTCTCTGGTGAAGGATTACTTCACCAGATGGCAGAACCTGTCCC
CAGACAAGATTTTCCACGTCATTGTGGCCCCATGTTATGACAAGAAACTGGAGGCCCTTTGAGAAGATGTTCCCACAGCT
TTACATAGTTCCCAGGGTGCTGACTGCTTGTTAACCTCAGGTGAAATTGTCCAGATAATGGAGCAAAGTGACCTCGCCTG
GAATGACGCCACCATGGACACTCTGTTTGGAGACATGAAGGAGAAGGAGGTGAGGCTCCACGAGGGTGCCAGCTCCGATG
GGTACCTGGTGCACATCTTCAGGCACATGGCCAAGGAGCTGTTCAACAAGGATGTGGGAGTGCTCACCTACCACACCCTG
AGGAACAAAGACTTCCAGGAGGTCACCCTTGAAAGGGACGGAGAGGTTCTGCTATGCTTTGAGGCTGCTATGGCTTTCAG
AACATCCAGAAGTAGTCCTGAAGCTGTAAAGGGGCAAGTTCTCCTGTCACTTTGTGGAGGTTCTGGCCTGCCCTGGTCAT
GCTTAAGTAGCAGGGGCCAGGCCCAGGTGGATGACAGGCATGCAGAAGGGCACTGTTGTGGCAGATGGAAGGCGTCTACG
CTGCCATCCCGGTGTGGCCCCCTGGAGACCAGAGCCCATGTGCAGGAGCTGTACCAGGAGTGGCTGGGGCTGGGAGGCGA
CTCCCCCTGGGCCCAGGCAGCCCTGCACTTTGCCTAGCAGAGCTCAGGGCAGCCTGCC

Alignment

ORF - retro_mluc_1083 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.78 %
• Parental protein coverage: 98.47 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
          MKC.HCT.KECS.....DDQENA.....S.AQENGEKGE.HKLADAKIFLSDCLACDSCV.AEEGVQVSQ
Retrocopy MKCDHCTQKECSXXXXXDDQENAAVNIWSLAQENGEKGEIHKLADAKIFLSDCLACDSCVAAEEGVQVSQ

Parental  QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLK-SLGVHYVFDMTIA
          QN.KDFF..LNLNKKCD.SQHKVLAVS.CP.SLPYFAAK.SLSVTDASRRLCGFLK..LG...VFDM.IA
Retrocopy QNTKDFFCALNLNKKCDTSQHKVLAVSMCP*SLPYFAAKLSLSVTDASRRLCGFLK>ALGCT-VFDMKIA

Parental  ADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITP-HLCTAKSPQQIMGSLVKDY
          ADFSILESQKEFVRRY.QHREEEPRLPMLTSAC..W.RYAERVLGHPITP.HL.TAKSP.QIMGSLVKDY
Retrocopy ADFSILESQKEFVRRYCQHREEEPRLPMLTSAC--WDRYAERVLGHPITP<HL*TAKSPKQIMGSLVKDY

Parental  FARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTL
          F.R.QNLSPDKIFHVIVAPCYDKKLEAL.EDVPTALHSS.GADC.LTSGEIVQ.MEQSDL...DA..DTL
Retrocopy FTRWQNLSPDKIFHVIVAPCYDKKLEAL*EDVPTALHSSQGADCLLTSGEIVQIMEQSDLAWNDATMDTL

Parental  LTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAA
          ...FGD.KE.EVR.HEGASSDGYL.HIFRH.AKELFN.DVG.LTY..LRNKDFQEVTLERDGEVLL.F.A
Retrocopy ---FGDMKEKEVRLHEGASSDGYLVHIFRHMAKELFNKDVGVLTYHTLRNKDFQEVTLERDGEVLLCFEA

Parental  A-YGFRNIQ-NVVLKLKRGKFPYHFVEVLACAG-GCLSGRGQAQAEDGRAD-RALLRQMEGIYAAIPVRP
          A.YGF.NIQ..VVLKL.RGKF..HFVEVLAC.G..CLS.RGQAQ..D..A..RALL.QMEG.YAAIPV.P
Retrocopy A<YGFQNIQ<EVVLKL*RGKFSCHFVEVLACPG<SCLSSRGQAQVDDRHAE<RALLWQMEGVYAAIPVWP

Parental  P-ETSAHVQELYQEWLG-GADSP-RPRALHTAYQGPGQSA
          P.ET.AHVQELYQEWLG.G.DSP....ALH.A.Q..GQ.A
Retrocopy P>ETRAHVQELYQEWLGLGGDSPWAQAALHFA*QSSGQPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1083 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083 , retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,