RetrogeneDB ID: | retro_mluc_1012 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429788:4949248..4950041(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000027093 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMLUG00000017740 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.51 % |
Parental protein coverage: | 58.3 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | HPITPHLCT-AKSPQQIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCV |
HPIT.HLC..AKSPQQIMG.LVKDYF....NLSPDKIFHV.VA.CYDKKLEALRED.PTALHSSRGADCV | |
Retrocopy | HPITSHLCR<AKSPQQIMGFLVKDYFFSQKNLSPDKIFHVTVALCYDKKLEALREDFPTALHSSRGADCV |
Parental | LTSGEIVQLMEQSDLSADDALVDTLLTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTY |
LTSGEIVQ.MEQSDL...DA...TL...FGD.KEEE.R.HEGASSDGYL.HIFRH.AKELFNEDVG.LTY | |
Retrocopy | LTSGEIVQIMEQSDLTLNDATLNTL---FGDMKEEEMRLHEGASSDGYLVHIFRHMAKELFNEDVGVLTY |
Parental | RSLRNKDFQEVTLERDGEVLLRFAAA-YGFRNIQ-NVVLKLKRGKFPYHFVEVLACAGGCLSGRGQAQAE |
R.LRNKDFQEVTLERDG.VLLRF.AA..GF.NIQ..VVLKL.RGKFP.HFVEVLACAG...S.RGQAQAE | |
Retrocopy | RTLRNKDFQEVTLERDGVVLLRFEAA<LGFCNIQ<EVVLKL*RGKFPCHFVEVLACAGDA*SVRGQAQAE |
Parental | DGRADRALLRQMEGIYAAIPVRPPETSAHVQELYQEWL-GGADSPRPR-ALHTAYQGPGQSA |
DGRADRALL.QMEGIYAAIPV.PPETS.HVQELYQEWL.GG...P.P..ALHTA.QGPGQ.A | |
Retrocopy | DGRADRALLQQMEGIYAAIPVWPPETSVHVQELYQEWLVGGRLPPGPG>ALHTA*QGPGQPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018178 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012976 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011246 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009329 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017740 | 23 retrocopies |
retro_mluc_1006, retro_mluc_1012 , retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,
|