RetrogeneDB ID: retro_mluc_825

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429777:9810564..9811726(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_825
ATGCAGTGTGATCACTGCACACAGAAGGAATGTAGTAAAAAAACAAAAACCGACGACCAAGAGAATGCCGCAGTCAACGT
CTGGAGTCCGGCTCAGGAGAACAGAGAGAAGGGAGAATGCCATAAGTTGGCCGATGCCAAGATATTTCTGAGTGACTGCC
TGGCGTGTGACAGTTGTGTGACCGCAGAGGAAGGAGTCCAAGTTTCTCAGCAGAACACCAAGGACTTCTTCCATGTTCTA
AACCTTAATAAGAAATATGATACCTCACAGCACAAGGTGCTGGCAGTGTCCGTGTGTCCTTAGTCTCTGCCTTATTTTGC
TGCTAAATTCAGCCTCAGTGTCACTGATGCATCCAGAAGACTCTGTGGCTTCCTCAAAAGCCTCGGGACGCACTGTCTTT
GACATGAAGATAGCTGCGGACTTCAGCATCCTGGAGTCAGGAGGAATTTGTGCGTCGGTACTGCCAGCACCATAAGGAAG
AGCCCCGGCTACCCATGCTGACCTCCGCCTGCCCTGGCTGGGTCTGATATGCAGAGCACATGCTGGGTCACCCCATCACC
CCTACCTCTGCATGGCCAAGTCTCCCCAGCAGATCATGGGCTCTCCGGTGAAGGATTACTTCACCAGACAGCAGAACCTG
TCCCCAGACAAGATTTTCCACGTCATTGTGGCCCTGTGTTATGACAAGAAACTGGAGGCCCTTTGAGAAGATGTTCCCAC
AGCTTTACATAGTTCCCTGGGTGCTGACTGCATATTAACCTCAGGTGAAATTGTCCAGGTAATGGAGCAAAGTGACGTCC
CCTCGAATGACGCCTGCGTGGACACTCTGTTTGGAGACATGTAGGAGGAGGAGGTGAGGTTCCACGGAGGTGCCAGCTCC
GACGGGTACCTGGTGCACATCTTCGGGCACATGGCCAAGGAGCTGCTCAACGAGGACGTGGGGGTGTTCACCAACCGCAC
CCTGAGGAACAAAGACTTCCAGGAGGTCACCCATGAAAGGGAAGGAGAGGTTCTGCTATGCTTTGAGGCTGCTACAGCTT
TCAGAACATCCAGAAGTGGTCCTAAAGCTGTAGAGGGGCAAGTTCCCCTGCCACTTCATGGAGGTCCCGGCCTGTGCCGG
GCATGCCTAAGCGGCAGGGGCCAGGCCCAGGCAGAGGATGGG

Alignment

ORF - retro_mluc_825 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.94 %
• Parental protein coverage: 85.81 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
          M.C.HCT.KECS.....DDQENA.....SPAQEN.EKGE.HKLADAKIFLSDCLACDSCVTAEEGVQVSQ
Retrocopy MQCDHCTQKECSXXXXXDDQENAAVNVWSPAQENREKGECHKLADAKIFLSDCLACDSCVTAEEGVQVSQ

Parental  QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFL-KSLGVHYVFDMTIA
          QN.KDFF.VLNLNKK.D.SQHKVLAVSVCP.SLPYFAAKFSLSVTDASRRLCGFL.K..G...VFDM.IA
Retrocopy QNTKDFFHVLNLNKKYDTSQHKVLAVSVCP*SLPYFAAKFSLSVTDASRRLCGFL>KASG-RTVFDMKIA

Parental  ADFSILES-QKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPIT-PHLCTAKSPQQIMGSLVKD
          ADFSILES......R....H..EEPRLPMLTSACPGWV.YAE..LGHPIT.P.LC.AKSPQQIMGS.VKD
Retrocopy ADFSILES>EEFVRRYCQHHK-EEPRLPMLTSACPGWV*YAEHMLGHPIT<PYLCMAKSPQQIMGSPVKD

Parental  YFARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDT
          YF.R.QNLSPDKIFHVIVA.CYDKKLEAL.EDVPTALHSS.GADC.LTSGEIVQ.MEQSD....DA.VDT
Retrocopy YFTRQQNLSPDKIFHVIVALCYDKKLEAL*EDVPTALHSSLGADCILTSGEIVQVMEQSDVPSNDACVDT

Parental  LLTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFA
          L...FGD..EEEVR.H.GASSDGYL.HIF.H.AKEL.NEDVG..T.R.LRNKDFQEVT.ER.GEVLL.F.
Retrocopy L---FGDM*EEEVRFHGGASSDGYLVHIFGHMAKELLNEDVGVFTNRTLRNKDFQEVTHEREGEVLLCFE

Parental  AA-YGFRNIQ-NVVLKLKRGKFPYHFVEVLACAG-GCLSGRGQAQAEDG
          AA.Y.F.NIQ..VVLKL.RGKFP.HF.EV.ACAG..CLSGRGQAQAEDG
Retrocopy AA<YSFQNIQ<EVVLKL*RGKFPCHFMEVPACAG<ACLSGRGQAQAEDG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_825 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825 , retro_mluc_877, retro_mluc_879, retro_mluc_982,