RetrogeneDB ID: | retro_mluc_825 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429777:9810564..9811726(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMLUG00000017740 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.94 % |
Parental protein coverage: | 85.81 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ |
M.C.HCT.KECS.....DDQENA.....SPAQEN.EKGE.HKLADAKIFLSDCLACDSCVTAEEGVQVSQ | |
Retrocopy | MQCDHCTQKECSXXXXXDDQENAAVNVWSPAQENREKGECHKLADAKIFLSDCLACDSCVTAEEGVQVSQ |
Parental | QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFL-KSLGVHYVFDMTIA |
QN.KDFF.VLNLNKK.D.SQHKVLAVSVCP.SLPYFAAKFSLSVTDASRRLCGFL.K..G...VFDM.IA | |
Retrocopy | QNTKDFFHVLNLNKKYDTSQHKVLAVSVCP*SLPYFAAKFSLSVTDASRRLCGFL>KASG-RTVFDMKIA |
Parental | ADFSILES-QKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPIT-PHLCTAKSPQQIMGSLVKD |
ADFSILES......R....H..EEPRLPMLTSACPGWV.YAE..LGHPIT.P.LC.AKSPQQIMGS.VKD | |
Retrocopy | ADFSILES>EEFVRRYCQHHK-EEPRLPMLTSACPGWV*YAEHMLGHPIT<PYLCMAKSPQQIMGSPVKD |
Parental | YFARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDT |
YF.R.QNLSPDKIFHVIVA.CYDKKLEAL.EDVPTALHSS.GADC.LTSGEIVQ.MEQSD....DA.VDT | |
Retrocopy | YFTRQQNLSPDKIFHVIVALCYDKKLEAL*EDVPTALHSSLGADCILTSGEIVQVMEQSDVPSNDACVDT |
Parental | LLTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFA |
L...FGD..EEEVR.H.GASSDGYL.HIF.H.AKEL.NEDVG..T.R.LRNKDFQEVT.ER.GEVLL.F. | |
Retrocopy | L---FGDM*EEEVRFHGGASSDGYLVHIFGHMAKELLNEDVGVFTNRTLRNKDFQEVTHEREGEVLLCFE |
Parental | AA-YGFRNIQ-NVVLKLKRGKFPYHFVEVLACAG-GCLSGRGQAQAEDG |
AA.Y.F.NIQ..VVLKL.RGKFP.HF.EV.ACAG..CLSGRGQAQAEDG | |
Retrocopy | AA<YSFQNIQ<EVVLKL*RGKFPCHFMEVPACAG<ACLSGRGQAQAEDG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018178 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012976 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011246 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009329 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017740 | 23 retrocopies |
retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825 , retro_mluc_877, retro_mluc_879, retro_mluc_982,
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