RetrogeneDB ID: retro_mluc_1457

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429841:3804874..3805717(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025111
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_1457
ATGAAGTGTGATCACTGCACACGGAAGGAATGTAGTAAAAAAACAAAAACCGATGACCAAGAGAATGCCACAGTCAATGT
CTGGAGTCTGACTTAGAAGAACGGAGAGAAGGGAGAATTCCATAAGGTGGCCGATGCCAAGATATTTCTGAGTGACTGCC
TGGTGTGTGACAGTTGTGTGACTGCAGAGGAAGGAGTCCAAGTTTCTCAGCAGATCGCCAAGGACTTCTTCCATGTTCTG
AACCTTTATAAGAAATGTGATACCTCACAGCACAAGGTGCTGGCAGTGTCCGTGTGTCCTCAGTCTCTGCCTTATTTTGC
TGCTAAATTCAGCCTCAGTGTCACTGATGCATCCAGAAGGTTCTGTGGCTTCCAGAAAGACCTTGGGGCGCACTGTCTTT
GACATGAAGATAGCCTCGGACTTCAGCATCCTGGAGAGTCAGAAGTAATTTGTGCATCGGTACTGCCAGCACCGTGAGGA
AGAGCCCCGGCTACCCATGCTGACCTCCGCCTGCCCCGGCTGGGACCCATATGCAGAGCGTGTGCTGGGGCACCCCATCA
CCCCTCACCTCTGCACGGCCAAGTCTCCCCAGCCAATCATGGGCTCACTGGTGAAGGATTGCTTCACCAGACAGCAGAAC
CTGTCCCCAGACAAGATTTTCCACGTCATTGCGGTCCCATGTTATGACAAGAAACTGGAGGCCCTTCGAAAAGATGTTCC
CACAGTTTCGCATAGTCAGGGTGCTGACTGCATGTTAACCTCAGGAAAATTGTCCAGATAATGGAGCAAAGTGACCTCAC
CTCCAAAGATACCGCCATGGACACTGTTTGGAGACGTGAAGGA

Alignment

ORF - retro_mluc_1457 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.95 %
• Parental protein coverage: 61.79 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ
          MKC.HCTRKECS.....DDQENA.....S....NGEKGEFHK.ADAKIFLSDCL.CDSCVTAEEGVQVSQ
Retrocopy MKCDHCTRKECSXXXXXDDQENATVNVWSLT*KNGEKGEFHKVADAKIFLSDCLVCDSCVTAEEGVQVSQ

Parental  QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLK-SLGVHYVFDMTIA
          Q.AKDFF.VLNL.KKCD.SQHKVLAVSVCPQSLPYFAAKFSLSVTDASRR.CGF.K..LG...VFDM.IA
Retrocopy QIAKDFFHVLNLYKKCDTSQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRFCGFQK>TLG-RTVFDMKIA

Parental  ADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQQIMGSLVKDYF
          .DFSILESQK.FV.RY.QHREEEPRLPMLTSACPGW..YAERVLGHPITPHLCTAKSPQ.IMGSLVKD.F
Retrocopy SDFSILESQK*FVHRYCQHREEEPRLPMLTSACPGWDPYAERVLGHPITPHLCTAKSPQPIMGSLVKDCF

Parental  ARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSG-EIVQLMEQSDLSADDALVDTL
          .R.QNLSPDKIFHVI..PCYDKKLEALR.DVPT..H.S.GADC.LTSG..IVQ.MEQSDL...D...DT.
Retrocopy TRQQNLSPDKIFHVIAVPCYDKKLEALRKDVPTVSH-SQGADCMLTSG<KIVQIMEQSDLTSKDTAMDTV

Parental  LTRFG
          ..R.G
Retrocopy WRREG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1457 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457 , retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,