RetrogeneDB ID: | retro_mluc_817 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429777:5654147..5654996(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000023731 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMLUG00000017740 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.97 % |
Parental protein coverage: | 62.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQ |
MKCEHCTRKECS.....DDQENA.....SPAQEN.EKGEFHKLADA.IFLSDCLACDSCVTAEEGVQVSQ | |
Retrocopy | MKCEHCTRKECSXXXXXDDQENATVNVRSPAQENREKGEFHKLADAQIFLSDCLACDSCVTAEEGVQVSQ |
Parental | QNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFL-KSLGVHYVFDMTIA |
QN..DFF.VLN.NKKCD.SQ.KVLAVSV..QSLPYFAAKFSLSVTDASRR.CGFL.K..G...VFDMTIA | |
Retrocopy | QNTTDFFHVLNPNKKCDTSQNKVLAVSVYCQSLPYFAAKFSLSVTDASRRFCGFL>KASG-RTVFDMTIA |
Parental | ADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQQIMGSLVKDYF |
ADFSILESQ.EFV..Y.QH.EEEP.LPMLTSACPGWVRYA...LGHP.TPHL.TAKSPQQIMGSLVKDYF | |
Retrocopy | ADFSILESQEEFVCQYCQHHEEEPWLPMLTSACPGWVRYAKHMLGHPFTPHLYTAKSPQQIMGSLVKDYF |
Parental | ARRQNLSPDKIFHVIVAPCYDKKLEALRED-VPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTL |
AR.Q.LSPDKIFHVIVAPCYDKKLEAL.ED..PTALHSS.GADCVLTSGEIVQ.MEQSDL...D...DTL | |
Retrocopy | ARWQILSPDKIFHVIVAPCYDKKLEAL*ED<FPTALHSSQGADCVLTSGEIVQIMEQSDLALNDTAMDTL |
Parental | LTRFGDVKE |
...FGD.KE | |
Retrocopy | ---FGDMKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018178 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012976 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011246 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009329 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017740 | 23 retrocopies |
retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817 , retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,
|