RetrogeneDB ID: | retro_mluc_1124 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429796:9243396..9244230(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMLUG00000017740 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.72 % |
Parental protein coverage: | 60.92 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | CTRKECSKKTKTDDQENASADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQVSQQNAKD |
CT.KECS.....DD.ENA.....SPAQEN.EKGEFHKLADAKI.LSDCLA.DSCVTAEEGVQVSQQ..KD | |
Retrocopy | CTWKECSXXXXXDD*ENAAVNIGSPAQENREKGEFHKLADAKILLSDCLAYDSCVTAEEGVQVSQQYTKD |
Parental | FFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLK-SLGVHYVFDMTIAADFSI |
FF.VLNLNKKCD.SQ.KVLAVSVCPQSLPYFAAKFSLSVTDASRRLC.FLK..LG...VFD..IAADFSI | |
Retrocopy | FFCVLNLNKKCDTSQNKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCSFLK>ALG-STVFDVKIAADFSI |
Parental | LESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITP-HLCTAKSPQQIMGSLVKDYFARRQ |
L.SQKEFV.RY.QH.EEEPR.PMLTS.CPGWV.YAE.VLGHPITP.HL.T.KSPQ.IMGSLVKDYFAR.Q | |
Retrocopy | LKSQKEFVHRYCQHHEEEPRPPMLTSTCPGWV*YAEQVLGHPITP<HL*TVKSPQRIMGSLVKDYFARCQ |
Parental | NLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTLLTRFG |
NLSPDKIFH..VA.CYDKKLEAL.EDVPTALHSS.GADCVLTSGEIVQ.MEQSDL...DA.VDT.....G | |
Retrocopy | NLSPDKIFHITVALCYDKKLEAL*EDVPTALHSSQGADCVLTSGEIVQIMEQSDLASNDAAVDTVWRHEG |
Parental | D |
. | |
Retrocopy | E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018178 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012976 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011246 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009329 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017740 | 23 retrocopies |
retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124 , retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,
|