RetrogeneDB ID: | retro_btau_820 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:57212220..57213063(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NARF | ||
Ensembl ID: | ENSBTAG00000018178 | ||
Aliases: | None | ||
Description: | nuclear prelamin A recognition factor [Source:RefSeq peptide;Acc:NP_001095788] |
Percent Identity: | 73.08 % |
Parental protein coverage: | 62.06 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | PGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALQEDVLT |
PGWVR.AE..L.HPVTPHLCT..S..QIMGSLVK.Y.AR.QNLSPDK.FHVIVAPCYDKKLEALQED.L. | |
Retrocopy | PGWVR*AEQML*HPVTPHLCTVTSS*QIMGSLVKYYIARPQNLSPDKVFHVIVAPCYDKKLEALQEDILM |
Parental | A-SRGSRGTDCVLTSGEIAQMMEQ-SDVSVREAALDTLFGDVKEEELRRHDGAGSDGYLAHIFRHAAKEL |
..SR.SRGTD...........M.........E.......GDVKEEELR.HDG..SDGYLAHIFRHA.KEL | |
Retrocopy | S<SRVSRGTD*LVLTSGKIAQMME<TELPLDETCCPAHSGDVKEEELRHHDGVSSDGYLAHIFRHAGKEL |
Parental | FNEDVGEVTYRALRNKDFQEVTLEKSGEVLLRFAAAYGFRNIQNVVLKLKKGKFPYHFVEVLACAGGCLN |
F.EDVGEVTY.ALRNKDFQEVTLEKS.EV.L.FAAAYGF.NIQN.VLK..KGKFPYHFVEVL.C.G.CLN | |
Retrocopy | FSEDVGEVTYHALRNKDFQEVTLEKSREVFLHFAAAYGF*NIQNGVLKW-KGKFPYHFVEVLVCVGVCLN |
Parental | GRGQAQTADGRTDKALLQKMKGIYADIPVQLPEASTHVQELYQEWLDGT-DSPRVQEALHTAYQGPGQPA |
GRGQAQT.DG...KALLQKMKG.Y.DI.VQL.EA.THVQELY.EWL.GT.DS..VQEALHT.Y.G.GQPA | |
Retrocopy | GRGQAQTEDGHIEKALLQKMKGLYTDISVQLLEARTHVQELYREWLEGT<DSLHVQEALHTSY*GSGQPA |
Parental | DSRDIK |
DSRDIK | |
Retrocopy | DSRDIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 6 .20 RPM |
ERP005899_muscle | 0 .00 RPM | 31 .88 RPM |
SRP017611_brain | 0 .00 RPM | 29 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .66 RPM |
SRP017611_liver | 0 .00 RPM | 10 .04 RPM |
SRP030211_testis | 0 .00 RPM | 44 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018178 | 1 retrocopy |
retro_btau_820 ,
|
Canis familiaris | ENSCAFG00000012976 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011246 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009329 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017740 | 23 retrocopies |
retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879, retro_mluc_982,
|