RetrogeneDB ID: | retro_pvam_196 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1820:65528..66378(-) | ||
Located in intron of: | ENSPVAG00000016769 | ||
Retrocopyinformation | Ensembl ID: | ENSPVAG00000016772 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSPVAG00000000322 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 66.55 % |
Parental protein coverage: | 76.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA |
SKS.SPKEPEQL.KLFIGGLSF.TT.ESLRSH.E.WGTLTDC.VM.DPN.K.SRGFGFVTYATVEEVDAA | |
Retrocopy | SKSASPKEPEQLQKLFIGGLSFKTTVESLRSHYEDWGTLTDCMVMKDPNAKCSRGFGFVTYATVEEVDAA |
Parental | MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG |
M.AR.HKVDGRVVEP.R.VSREDSQRPGAHLTV.KIFVGGIKEDTEEH.LR.Y.EQYGK.EV.EIMTDRG | |
Retrocopy | MKARAHKVDGRVVEPQRLVSREDSQRPGAHLTVTKIFVGGIKEDTEEHRLRVYLEQYGKTEVTEIMTDRG |
Parental | -SGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL-SKQEMASASSSQRGRSGSGNFGGGRGGG |
.SG.KRGFAFVTF.D.DS..K.VIQKYHTVN.H..................S..R........GG..G.. | |
Retrocopy | SSG*KRGFAFVTF-DNDSENKAVIQKYHTVNSHD*RKESTI>KQKKASASPSQRR*SVSGNFGGGCGG-R |
Parental | FGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYFGGSRGYGSGGQGYGNQGS |
F.GND.FG..GNFSG.G.F.GS.GGGGYGGSGDGYNGFGNDG...G........S..Y.......G.... | |
Retrocopy | FSGNDKFGHRGNFSGQGDFSGSCGGGGYGGSGDGYNGFGNDGSNFGSSRS-SNNSGNYNNSSSNCGPTKG |
Parental | GYGGSGS |
G..G..S | |
Retrocopy | GN*GRSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |